>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1217

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   TAQVHTTDVLQAMNASNREHTWISSKLIRYI*ETRNPCFSLQ-RKSLWEHLGEGFGTSTF 179
           T  +   D+L+A  AS  + +W+   +I  I     P   L+  +     L + +     
Sbjct: 204 TRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRPMVQLEGGRFATSDLNDLYRRVIN 263

Query: 180 FSNRFNKTKDPEQPSIIPKNH*RSEQ 257
            +NR  +  D   PSII +N  R  Q
Sbjct: 264 RNNRLKRLLDLNAPSIIVQNEKRMLQ 289

>CT129_HUMAN (Q9H4H8) Protein C20orf129|
          Length = 585

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 154 EKVLVPPHSSATD-STKQKIQSSHQSSLKITEEVSKQGTPGSRT 282
           E +L P  + +T+ S   K+  S  SSLK +  VS QG+  S T
Sbjct: 448 ENILFPRGTQSTEGSPVSKMSVSRSSSLKSSSSVSSQGSVASST 491

>NIFE_METMP (P71528) Nitrogenase iron-molybdenum cofactor biosynthesis protein|
           nifE
          Length = 480

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 148 IWEKVLVPPHSSAT-DSTKQKIQSSHQSSLKITE 246
           ++EK+ V  H++ T DST  K+ S+H+S L I +
Sbjct: 244 LYEKMGVKVHTAITGDSTVAKVASAHRSKLNIVQ 277

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 35   SHECKQQRTYMDKLKA----HPLHLRDAESLLQSSAKVTLGTSGRRFWYLHILQQQIQQN 202
            SH  +Q  TYM  ++A     PLH      + QS     L   GR        QQQ+QQ 
Sbjct: 3633 SHHPQQPGTYMVGIRAPSPHSPLH-SPGRGVAQSRLVGQLSPVGRPMVSQPSPQQQVQQT 3691

Query: 203  KRSRAAINHP 232
            ++  A I  P
Sbjct: 3692 QQQHALITSP 3701

>Y260_MYCGE (P47502) Hypothetical lipoprotein MG260 precursor|
          Length = 765

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = +1

Query: 73  AQSSSATSKRRGILASVFSESHSGNIWEKVLVPPHSSATDSTKQKIQSSHQSSLKIT 243
           A  SS +++++G L  + ++S +  +W+ +     +++ ++TK++ Q    SS   T
Sbjct: 187 ATVSSRSAEKKGTL-EIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSST 242

>C1S_HUMAN (P09871) Complement C1s subcomponent precursor (EC 3.4.21.42) (C1|
           esterase) [Contains: Complement C1s subcomponent heavy
           chain; Complement C1s subcomponent light chain]
          Length = 688

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 217 CSGS-FVXXXXXLKNVEVPKPSPRCSQSDFR*RLKQGFRV 101
           CSG  F      + +   PKP P  S+ +++ RL++GF+V
Sbjct: 175 CSGDVFTALIGEIASPNYPKPYPENSRCEYQIRLEKGFQV 214

>LEUD_PYRKO (Q5JFV7) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 163

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 123 LQRKSLWEHLGEGFGTSTFFSNRFNKTKDPEQPSIIPKNH*RSEQAGNSRQSYVVV 290
           + R  +W   G+   T T    R+N TKDPE+ + I     R E +   +   VVV
Sbjct: 2   ITRGRVWR-FGDNVSTDTITPGRYNLTKDPEELARIAFIEARPEFSREVKPGDVVV 56

>RAP1_SCHPO (Q96TL7) DNA-binding protein rap1|
          Length = 693

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 127 SESHSGNIWEKVLVPPHSSATDSTKQKIQSSHQSSLKITEEVSK 258
           S+S   N  ++++V P+SS  D T+   + +  S +  +  VSK
Sbjct: 180 SDSDESNYCQRIIVKPYSSQKDYTQSTHEQTLSSPISKSASVSK 223

>MASTL_HUMAN (Q96GX5) Microtubule-associated serine/threonine-protein|
           kinase-like (EC 2.7.11.1)
          Length = 879

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 79  SSSATSKRRGILASVFSESHSGNIWEK 159
           +SSA+S+    ++SV SE HS   WEK
Sbjct: 299 TSSASSQSHTFISSVESECHSSPKWEK 325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,587,393
Number of Sequences: 219361
Number of extensions: 715182
Number of successful extensions: 2077
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)