>emb|AJ539160.1|TAE539160 Triticum aestivum sdh2-rps14 gene
          Length = 3666

 Score =  107 bits (54), Expect = 2e-20
 Identities = 103/120 (85%), Gaps = 7/120 (5%)
 Strand = Plus / Minus

                                                                        
Query: 20   aagtttatgaattacttcatgcatgagcatcaaaatatgat-------gaaccaccaaac 72
            |||||||||||||| || |||||||  |||||||| |||||       ||||||||||||
Sbjct: 3509 aagtttatgaattaattgatgcatggacatcaaaagatgatcaacggagaaccaccaaac 3450

                                                                        
Query: 73   tagatacagcacggaaagaacaaaatctggtagcaattattcactccctacacggaatcg 132
            ||||||||||||| |||||| |||||||||||||||||||||||   |||||||||||||
Sbjct: 3449 tagatacagcacgaaaagaataaaatctggtagcaattattcacgaactacacggaatcg 3390



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 57/62 (91%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                        
Query: 168  accatggagcaaaaacaaaccaaatggcaggctgattacaactttccgacatctccacgg 227
            |||| ||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 3349 accacggagccaaaacaaaccaaatgccaggctgattacaattttcc-acatctccacgg 3291

              
Query: 228  gg 229
            ||
Sbjct: 3290 gg 3289



 Score = 46.1 bits (23), Expect = 0.057
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 249  cactcaggctccgagctgcagct 271
            |||||||||||||||||||||||
Sbjct: 3278 cactcaggctccgagctgcagct 3256

>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     gaaccaccaaactagatacag 81
              |||||||||||||||||||||
Sbjct: 161463 gaaccaccaaactagatacag 161483

>gb|AC159305.3| Mus musculus BAC clone RP23-205D10 from chromosome 6, complete sequence
          Length = 209064

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     taataattaataagtttatga 29
             |||||||||||||||||||||
Sbjct: 13345 taataattaataagtttatga 13365

>gb|AF320597.1|AF320597 Mus musculus C lectin-related protein E pseudogene, partial sequence
          Length = 19272

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     taataattaataagtttatga 29
             |||||||||||||||||||||
Sbjct: 11209 taataattaataagtttatga 11189

>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    aaaccaaatggcaggctgatt 204
              |||||||||||||||||||||
Sbjct: 327554 aaaccaaatggcaggctgatt 327534

>gb|AC174446.2| Mus musculus BAC clone RP23-356N23 from chromosome 6, complete sequence
          Length = 193034

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     taataattaataagtttatga 29
             |||||||||||||||||||||
Sbjct: 74780 taataattaataagtttatga 74760

>gb|AC153486.6| Mus musculus 6 BAC RP23-27E5 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 213560

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 61   gaaccaccaaactagatacag 81
            |||||||||||||||||||||
Sbjct: 1380 gaaccaccaaactagatacag 1400

>ref|NM_213191.1| Danio rerio zgc:77067 (zgc:77067), mRNA
          Length = 1418

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 tccgacatctccacgggggaagac 235
           |||| |||||||||||||||||||
Sbjct: 119 tccgtcatctccacgggggaagac 96

>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete
          sequence
          Length = 175603

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 14 attaataagtttatgaatta 33
          ||||||||||||||||||||
Sbjct: 90 attaataagtttatgaatta 71

>gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome 2, complete sequence
          Length = 205920

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   gaaaccatggagcaaaaaca 184
             ||||||||||||||||||||
Sbjct: 14976 gaaaccatggagcaaaaaca 14995

>gb|AC127349.3| Mus musculus BAC clone RP23-62M5 from chromosome 13, complete sequence
          Length = 193255

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tctggtagcaattattcact 117
             ||||||||||||||||||||
Sbjct: 58490 tctggtagcaattattcact 58509

>ref|XM_662081.1| Cryptosporidium hominis TU502 WD repeat protein (Chro.20305) partial
            mRNA
          Length = 3018

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tggagcaaaaacaaaccaaa 191
            ||||||||||||||||||||
Sbjct: 1929 tggagcaaaaacaaaccaaa 1948

>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10,
            complete sequence
          Length = 121560

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 212  tccgacatctccacgggggaagac 235
            |||| |||||||||||||||||||
Sbjct: 8414 tccgtcatctccacgggggaagac 8391

>gb|AC138015.24| Medicago truncatula clone mth2-34m6, complete sequence
          Length = 126845

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gaaccaccaaactagataca 80
             ||||||||||||||||||||
Sbjct: 36796 gaaccaccaaactagataca 36815

>emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1-196B13 on chromosome 6q22.2-22.33
             Contains part of the TCBA1 gene for T-cell lymphoma
             breakpoint associated target 1, complete sequence
          Length = 124219

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ttaataagtttatgaattac 34
             ||||||||||||||||||||
Sbjct: 13864 ttaataagtttatgaattac 13845

>emb|AL050403.16|HSDJ697P8 Human DNA sequence from clone RP4-697P8 on chromosome 20 Contains two
              novel genes and the FAT1P1 gene for FAT tumour suppressor
              homolog 1 (Drosophila) pseudogene 1, complete sequence
          Length = 144924

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    catggagcaaaaacaaacca 189
              ||||||||||||||||||||
Sbjct: 111374 catggagcaaaaacaaacca 111355

>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 47     catcaaaatatgatgaaccaccaaacta 74
              |||||||||||| |||| ||||||||||
Sbjct: 317332 catcaaaatatgttgaatcaccaaacta 317359

>gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosome 7, complete sequence
          Length = 213870

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    attaataagtttatgaatta 33
             ||||||||||||||||||||
Sbjct: 42564 attaataagtttatgaatta 42583

>gb|AC073531.22| Homo sapiens 12 BAC RP11-802J22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 212172

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    gggaagaccctgctctgctc 247
              ||||||||||||||||||||
Sbjct: 114223 gggaagaccctgctctgctc 114242

>gb|BC065992.1| Danio rerio zgc:77067, mRNA (cDNA clone MGC:77067 IMAGE:6960102),
           complete cds
          Length = 1418

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 tccgacatctccacgggggaagac 235
           |||| |||||||||||||||||||
Sbjct: 119 tccgtcatctccacgggggaagac 96

>gb|AC143337.27| Medicago truncatula clone mth2-35d19, complete sequence
          Length = 118139

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    gaaccaccaaactagataca 80
             ||||||||||||||||||||
Sbjct: 98127 gaaccaccaaactagataca 98108

>gb|DQ123841.1| Agrotis segetum nucleopolyhedrovirus, complete genome
          Length = 147544

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    gataataattaataagttta 26
            ||||||||||||||||||||
Sbjct: 9476 gataataattaataagttta 9457

>ref|XM_685575.1| PREDICTED: Danio rerio similar to nudC domain containing 3
           (LOC573178), mRNA
          Length = 829

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 tccgacatctccacgggggaagac 235
           |||| |||||||||||||||||||
Sbjct: 159 tccgtcatctccacgggggaagac 136

>ref|XM_626488.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_2910),
            partial mRNA
          Length = 3012

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tggagcaaaaacaaaccaaa 191
            ||||||||||||||||||||
Sbjct: 1929 tggagcaaaaacaaaccaaa 1948

>emb|BX005394.8| Zebrafish DNA sequence from clone DKEY-3N15 in linkage group 3,
             complete sequence
          Length = 190575

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    aagtttatgaattacttcat 39
             ||||||||||||||||||||
Sbjct: 39925 aagtttatgaattacttcat 39944

>gb|AC115612.2| Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4,
             complete sequence
          Length = 111882

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tttttgataataattaataa 21
             ||||||||||||||||||||
Sbjct: 30136 tttttgataataattaataa 30155

>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 47     catcaaaatatgatgaaccaccaaacta 74
              |||||||||||| |||| ||||||||||
Sbjct: 318687 catcaaaatatgttgaatcaccaaacta 318714

>gb|AC140844.3| Mus musculus BAC clone RP24-361P18 from 13, complete sequence
          Length = 132297

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tctggtagcaattattcact 117
             ||||||||||||||||||||
Sbjct: 99638 tctggtagcaattattcact 99657

>emb|AL772242.7| Mouse DNA sequence from clone RP23-15E4 on chromosome 2, complete
             sequence
          Length = 196548

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gaaaccatggagcaaaaaca 184
             ||||||||||||||||||||
Sbjct: 19822 gaaaccatggagcaaaaaca 19803


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,050,122
Number of Sequences: 3902068
Number of extensions: 3050122
Number of successful extensions: 71623
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71524
Number of HSP's gapped (non-prelim): 98
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)