ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast09e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete se... 44 0.10
2gb|AC137554.15| Medicago truncatula clone mth2-17j18, complete s... 44 0.10
3ref|XR_003561.1| PREDICTED: Mus musculus similar to centromere p... 42 0.40
4ref|XR_001749.1| PREDICTED: Mus musculus similar to centromere p... 42 0.40
5emb|AL356053.14| Human DNA sequence from clone RP11-453G10 on ch... 42 0.40
6gb|AC096556.1| Homo sapiens BAC clone RP11-102G8 from 2, complet... 42 0.40
7emb|AL355540.12| Human DNA sequence from clone RP5-1104A8 on chr... 42 0.40
8gb|AC132226.3| Mus musculus BAC clone RP24-571A14 from 1, comple... 42 0.40
9gb|AC157745.2| Xenopus tropicalis clone ISB1-79H24, complete seq... 40 1.6
10emb|AL390117.10| Human DNA sequence from clone RP11-116P22 on ch... 40 1.6
11emb|AL136966.27| Human DNA sequence from clone RP11-96M12 on chr... 40 1.6
12gb|AC011260.8| Homo sapiens, clone RP11-1E21, complete sequence 40 1.6
13dbj|BS000112.1| Pan troglodytes chromosome 22 clone:RP43-076J24,... 40 1.6
14emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 40 1.6
15dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 1.6
16emb|AL672221.14| Mouse DNA sequence from clone RP23-57B14 on chr... 40 1.6
17dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 1.6
18dbj|AP000210.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 1.6
19gb|AC152982.1| Mus musculus 10 BAC RP23-36F22 (Roswell Park Canc... 38 6.2
20ref|XM_476698.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.2
21ref|XM_506171.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 6.2
22gb|AC164410.5| Mus musculus chromosome 5, clone RP23-6J21, compl... 38 6.2
23gb|AC091263.15| Mus musculus chromosome 9, clone RP23-134F1, com... 38 6.2
24gb|AY380826.1| Lymphocystis disease virus - isolate China, compl... 38 6.2
25gb|AC186558.1| Gasterosteus aculeatus clone VMRC26-150D01, compl... 38 6.2
26gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, comp... 38 6.2
27gb|AC161295.3| Aotus nancymaae clone CH258-83B20, complete sequence 38 6.2
28gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome... 38 6.2
29gb|AY490790.1| Medicago truncatula strain R108-1 class IV chitin... 38 6.2
30gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome... 38 6.2
31emb|Z70680.1|CEC25G4 Caenorhabditis elegans Cosmid C25G4, comple... 38 6.2
32gb|AC124686.3| Mus musculus BAC clone RP24-422F20 from chromosom... 38 6.2
33emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in... 38 6.2
34gb|AC125093.4| Mus musculus BAC clone RP24-176F8 from chromosome... 38 6.2
35gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, compl... 38 6.2
36gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, c... 38 6.2
37gb|AC008155.10| Homo sapiens chromosome 7 clone RP11-289F17, com... 38 6.2
38gb|AF000298.1| Caenorhabditis elegans cosmid W03D2, complete seq... 38 6.2
39emb|AL356739.11| Human DNA sequence from clone RP11-324P13 on ch... 38 6.2
40gb|AY991555.1| Uncultured bacterium clone C10_P20 16S ribosomal ... 38 6.2
41emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, ... 38 6.2
42emb|AL049483.1|ATF20B18 Arabidopsis thaliana DNA chromosome 4, B... 38 6.2
43emb|AL645584.27| Mouse DNA sequence from clone RP23-280M7 on chr... 38 6.2
44emb|BX510939.5| Zebrafish DNA sequence from clone CH211-78C9 in ... 38 6.2
45gb|AC079603.11| Homo sapiens 12 BAC RP11-798I13 (Roswell Park Ca... 38 6.2
46gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Ca... 38 6.2
47gb|AC084281.5| Homo sapiens BAC clone RP11-755P23 from 4, comple... 38 6.2
48gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome... 38 6.2
49gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosom... 38 6.2
50dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
51gb|AC099344.4| Homo sapiens BAC clone RP11-427E2 from 2, complet... 38 6.2
52emb|BX005299.9| Zebrafish DNA sequence from clone CH211-107C24, ... 38 6.2
53dbj|AK098844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2
54dbj|AK065047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2
55emb|BX005395.9| Zebrafish DNA sequence from clone DKEY-8L13 in l... 38 6.2
56dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
57gb|AC101547.9| Mus musculus chromosome 5, clone RP23-193C5, comp... 38 6.2
58gb|AC132247.3| Mus musculus BAC clone RP24-424J1 from 19, comple... 38 6.2
59emb|AL935296.5| Zebrafish DNA sequence from clone CH211-281F5, c... 38 6.2
60emb|AL591125.20| Mouse DNA sequence from clone RP23-438D7 on chr... 38 6.2 
>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence
          Length = 112733

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 75    taaaaatcatgaaatttacata 96
             ||||||||||||||||||||||
Sbjct: 49248 taaaaatcatgaaatttacata 49269



 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 75    taaaaatcatgaaatttac 93
             |||||||||||||||||||
Sbjct: 60008 taaaaatcatgaaatttac 60026
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>gb|AC137554.15| Medicago truncatula clone mth2-17j18, complete sequence
          Length = 121248

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 75     taaaaatcatgaaatttacata 96
              ||||||||||||||||||||||
Sbjct: 120832 taaaaatcatgaaatttacata 120811



 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     taaaaatcatgaaatttac 93
              |||||||||||||||||||
Sbjct: 110072 taaaaatcatgaaatttac 110054
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>ref|XR_003561.1| PREDICTED: Mus musculus similar to centromere protein E (LOC671773),
            mRNA
          Length = 2605

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  cctggaaatttcatgccctgc 125
            |||||||||||||||||||||
Sbjct: 2384 cctggaaatttcatgccctgc 2364
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>ref|XR_001749.1| PREDICTED: Mus musculus similar to centromere protein E (LOC665569),
            mRNA
          Length = 2605

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  cctggaaatttcatgccctgc 125
            |||||||||||||||||||||
Sbjct: 2384 cctggaaatttcatgccctgc 2364
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>emb|AL356053.14| Human DNA sequence from clone RP11-453G10 on chromosome 10 Contains
           part of a novel gene (FLJ13031) (FLJ40349), complete
           sequence
          Length = 176355

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 68  ttacatgtaaaaatcatgaaa 88
           |||||||||||||||||||||
Sbjct: 778 ttacatgtaaaaatcatgaaa 758
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>gb|AC096556.1| Homo sapiens BAC clone RP11-102G8 from 2, complete sequence
          Length = 83374

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    gaaatttacatacttaaatac 105
             |||||||||||||||||||||
Sbjct: 33193 gaaatttacatacttaaatac 33173
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>emb|AL355540.12| Human DNA sequence from clone RP5-1104A8 on chromosome 1. Contains part
             of a novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 120219

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    ttacatgtaaaaatcatgaaa 88
             |||||||||||||||||||||
Sbjct: 69995 ttacatgtaaaaatcatgaaa 70015
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>gb|AC132226.3| Mus musculus BAC clone RP24-571A14 from 1, complete sequence
          Length = 180303

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   cctggaaatttcatgccctgc 125
             |||||||||||||||||||||
Sbjct: 68351 cctggaaatttcatgccctgc 68331
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>gb|AC157745.2| Xenopus tropicalis clone ISB1-79H24, complete sequence
          Length = 82063

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    ttttacatgtaaaaatcatgaaat 89
             |||||||||||||||| |||||||
Sbjct: 50142 ttttacatgtaaaaataatgaaat 50165
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>emb|AL390117.10| Human DNA sequence from clone RP11-116P22 on chromosome 1, complete
             sequence
          Length = 99260

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    catgtgaaacttttacatgtaaaa 79
             ||||||| ||||||||||||||||
Sbjct: 35698 catgtgagacttttacatgtaaaa 35675
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>emb|AL136966.27| Human DNA sequence from clone RP11-96M12 on chromosome 13 Contains part
             of a novel gene, complete sequence
          Length = 112884

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    caaataagcttatgtaaaac 29
             ||||||||||||||||||||
Sbjct: 67585 caaataagcttatgtaaaac 67566
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>gb|AC011260.8| Homo sapiens, clone RP11-1E21, complete sequence
          Length = 168476

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tacatgtaaaaatcatgaaa 88
             ||||||||||||||||||||
Sbjct: 61694 tacatgtaaaaatcatgaaa 61675
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>dbj|BS000112.1| Pan troglodytes chromosome 22 clone:RP43-076J24, map 22, complete
            sequences
          Length = 169786

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   catgtaaaaatcatgaaatt 90
            ||||||||||||||||||||
Sbjct: 4794 catgtaaaaatcatgaaatt 4775
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>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
             complete sequence
          Length = 165993

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    aaacttttacatgtaaaaatcatg 85
             ||||||||||||||||||| ||||
Sbjct: 77840 aaacttttacatgtaaaaaacatg 77817
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>dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, section 55/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   catgtaaaaatcatgaaatt 90
            ||||||||||||||||||||
Sbjct: 8058 catgtaaaaatcatgaaatt 8039
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>emb|AL672221.14| Mouse DNA sequence from clone RP23-57B14 on chromosome X, complete
              sequence
          Length = 189048

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     aaacttttacatgtaaaaat 81
              ||||||||||||||||||||
Sbjct: 153323 aaacttttacatgtaaaaat 153304
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>dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:P289H18, complete sequence
          Length = 146847

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    catgtaaaaatcatgaaatt 90
             ||||||||||||||||||||
Sbjct: 90142 catgtaaaaatcatgaaatt 90123
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>dbj|AP000210.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 8/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    catgtaaaaatcatgaaatt 90
             ||||||||||||||||||||
Sbjct: 21046 catgtaaaaatcatgaaatt 21027
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>gb|AC152982.1| Mus musculus 10 BAC RP23-36F22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214493

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 69     tacatgtaaaaatcatgaaattt 91
              |||||||| ||||||||||||||
Sbjct: 179096 tacatgtacaaatcatgaaattt 179074
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>ref|XM_476698.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1902

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   taagcttatgtaaaaccat 32
            |||||||||||||||||||
Sbjct: 1654 taagcttatgtaaaaccat 1636
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>ref|XM_506171.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.127 mRNA
          Length = 1913

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   taagcttatgtaaaaccat 32
            |||||||||||||||||||
Sbjct: 1666 taagcttatgtaaaaccat 1648
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>gb|AC164410.5| Mus musculus chromosome 5, clone RP23-6J21, complete sequence
          Length = 245837

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    aaatcatgaaatttacata 96
             |||||||||||||||||||
Sbjct: 99956 aaatcatgaaatttacata 99974
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>gb|AC091263.15| Mus musculus chromosome 9, clone RP23-134F1, complete sequence
          Length = 204289

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    tacatgtaaaaatcatgaa 87
             |||||||||||||||||||
Sbjct: 99165 tacatgtaaaaatcatgaa 99147
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>gb|AY380826.1| Lymphocystis disease virus - isolate China, complete genome
          Length = 186250

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    aaacttttacatgtaaaaa 80
             |||||||||||||||||||
Sbjct: 65342 aaacttttacatgtaaaaa 65360
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>gb|AC186558.1| Gasterosteus aculeatus clone VMRC26-150D01, complete sequence
          Length = 166468

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 10    caaataagcttatgtaaaaccatgggtgttt 40
             |||||||  |||||| |||||||||||||||
Sbjct: 18040 caaataaaattatgtcaaaccatgggtgttt 18070
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>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence
          Length = 160354

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     acttaaatacctggaaatt 114
              |||||||||||||||||||
Sbjct: 145361 acttaaatacctggaaatt 145379
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>gb|AC161295.3| Aotus nancymaae clone CH258-83B20, complete sequence
          Length = 151730

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    tacttaaatacctggaaat 113
             |||||||||||||||||||
Sbjct: 35330 tacttaaatacctggaaat 35312
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>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     aaacttttacatgtaaaaa 80
              |||||||||||||||||||
Sbjct: 143871 aaacttttacatgtaaaaa 143889
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>gb|AY490790.1| Medicago truncatula strain R108-1 class IV chitinase precursor
           (chit4) gene, complete cds
          Length = 1245

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 75  taaaaatcatgaaatttac 93
           |||||||||||||||||||
Sbjct: 681 taaaaatcatgaaatttac 663
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>gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome 10, complete sequence
          Length = 207598

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     aaagcttgtcaaataagct 19
             |||||||||||||||||||
Sbjct: 36833 aaagcttgtcaaataagct 36851
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>emb|Z70680.1|CEC25G4 Caenorhabditis elegans Cosmid C25G4, complete sequence
          Length = 33706

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 60   tgaaacttttacatgtaaa 78
            |||||||||||||||||||
Sbjct: 4256 tgaaacttttacatgtaaa 4274
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>gb|AC124686.3| Mus musculus BAC clone RP24-422F20 from chromosome 10, complete sequence
          Length = 194018

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      aaagcttgtcaaataagct 19
              |||||||||||||||||||
Sbjct: 169566 aaagcttgtcaaataagct 169584
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>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9,
             complete sequence
          Length = 153947

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    acatgtaaaaatcatgaaa 88
             |||||||||||||||||||
Sbjct: 98828 acatgtaaaaatcatgaaa 98846
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>gb|AC125093.4| Mus musculus BAC clone RP24-176F8 from chromosome 19, complete
           sequence
          Length = 158027

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  taagcttatgtaaaaccat 32
           |||||||||||||||||||
Sbjct: 925 taagcttatgtaaaaccat 907
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>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence
          Length = 200339

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     aaacttttacatgtaaaaa 80
              |||||||||||||||||||
Sbjct: 186899 aaacttttacatgtaaaaa 186917
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>gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, complete sequence
          Length = 143875

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 69    tacatgtaaaaatcatgaaattt 91
             |||||||| ||||||||||||||
Sbjct: 11913 tacatgtacaaatcatgaaattt 11891
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>gb|AC008155.10| Homo sapiens chromosome 7 clone RP11-289F17, complete sequence
          Length = 176181

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 96     acttaaatacctggaaatt 114
              |||||||||||||||||||
Sbjct: 137574 acttaaatacctggaaatt 137556
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>gb|AF000298.1| Caenorhabditis elegans cosmid W03D2, complete sequence
          Length = 29861

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 74   gtaaaaatcatgaaattta 92
            |||||||||||||||||||
Sbjct: 2601 gtaaaaatcatgaaattta 2583
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>emb|AL356739.11| Human DNA sequence from clone RP11-324P13 on chromosome 6, complete
             sequence
          Length = 98548

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    tttacatgtaaaaatcatg 85
             |||||||||||||||||||
Sbjct: 55328 tttacatgtaaaaatcatg 55346
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>gb|AY991555.1| Uncultured bacterium clone C10_P20 16S ribosomal RNA gene, partial
           sequence
          Length = 1306

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 89  tttacatacttaaatacct 107
           |||||||||||||||||||
Sbjct: 390 tttacatacttaaatacct 372
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>emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64
          Length = 196286

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 32/35 (91%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 73    tgtaaaaatcatgaaatttacatacttaaatacct 107
             ||||||||||||||||| |||| ||||||| ||||
Sbjct: 88541 tgtaaaaatcatgaaatataca-acttaaacacct 88508
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>emb|AL049483.1|ATF20B18 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20B18 (ESSA project)
          Length = 104738

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 32/35 (91%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 73    tgtaaaaatcatgaaatttacatacttaaatacct 107
             ||||||||||||||||| |||| ||||||| ||||
Sbjct: 37856 tgtaaaaatcatgaaatataca-acttaaacacct 37823
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>emb|AL645584.27| Mouse DNA sequence from clone RP23-280M7 on chromosome 1 Contains a
             novel gene and two CpG islands, complete sequence
          Length = 171382

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   cctggaaatttcatgccct 123
             |||||||||||||||||||
Sbjct: 85310 cctggaaatttcatgccct 85292
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>emb|BX510939.5| Zebrafish DNA sequence from clone CH211-78C9 in linkage group 16,
             complete sequence
          Length = 163843

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    aaacttttacatgtaaaaa 80
             |||||||||||||||||||
Sbjct: 42947 aaacttttacatgtaaaaa 42929
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>gb|AC079603.11| Homo sapiens 12 BAC RP11-798I13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164837

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 66     ttttacatgtaaaaatcatgaaa 88
              ||||||||| |||||||||||||
Sbjct: 132880 ttttacatggaaaaatcatgaaa 132902
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>gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 152449

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 66   ttttacatgtaaaaatcatgaaa 88
            ||||||||| |||||||||||||
Sbjct: 3497 ttttacatggaaaaatcatgaaa 3519
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>gb|AC084281.5| Homo sapiens BAC clone RP11-755P23 from 4, complete sequence
          Length = 135935

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    aaacttttacatgtaaaaa 80
             |||||||||||||||||||
Sbjct: 36761 aaacttttacatgtaaaaa 36743
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>gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome 14, complete sequence
          Length = 211666

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    aaaatcatgaaatttacat 95
             |||||||||||||||||||
Sbjct: 44492 aaaatcatgaaatttacat 44510
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>gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosome 9, complete sequence
          Length = 209633

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      agcttgtcaaataagctta 21
              |||||||||||||||||||
Sbjct: 110687 agcttgtcaaataagctta 110669
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 14      taagcttatgtaaaaccat 32
               |||||||||||||||||||
Sbjct: 3294011 taagcttatgtaaaaccat 3293993
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>gb|AC099344.4| Homo sapiens BAC clone RP11-427E2 from 2, complete sequence
          Length = 135598

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   aaatacctggaaatttcat 118
             |||||||||||||||||||
Sbjct: 76720 aaatacctggaaatttcat 76702
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>emb|BX005299.9| Zebrafish DNA sequence from clone CH211-107C24, complete sequence
          Length = 163047

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     aaacttttacatgtaaaaa 80
              |||||||||||||||||||
Sbjct: 142521 aaacttttacatgtaaaaa 142503
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>dbj|AK098844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B24, full
            insert sequence
          Length = 1902

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   taagcttatgtaaaaccat 32
            |||||||||||||||||||
Sbjct: 1654 taagcttatgtaaaaccat 1636
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>dbj|AK065047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I08, full
            insert sequence
          Length = 1915

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   taagcttatgtaaaaccat 32
            |||||||||||||||||||
Sbjct: 1666 taagcttatgtaaaaccat 1648
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>emb|BX005395.9| Zebrafish DNA sequence from clone DKEY-8L13 in linkage group 18, complete
              sequence
          Length = 171015

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     aaacttttacatgtaaaaa 80
              |||||||||||||||||||
Sbjct: 140218 aaacttttacatgtaaaaa 140236
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     taagcttatgtaaaaccat 32
              |||||||||||||||||||
Sbjct: 103704 taagcttatgtaaaaccat 103686
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>gb|AC101547.9| Mus musculus chromosome 5, clone RP23-193C5, complete sequence
          Length = 185061

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    aaatcatgaaatttacata 96
             |||||||||||||||||||
Sbjct: 21382 aaatcatgaaatttacata 21364
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>gb|AC132247.3| Mus musculus BAC clone RP24-424J1 from 19, complete sequence
          Length = 187078

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     taagcttatgtaaaaccat 32
              |||||||||||||||||||
Sbjct: 164135 taagcttatgtaaaaccat 164117
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>emb|AL935296.5| Zebrafish DNA sequence from clone CH211-281F5, complete sequence
          Length = 147042

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    aaacttttacatgtaaaaa 80
             |||||||||||||||||||
Sbjct: 22743 aaacttttacatgtaaaaa 22761
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>emb|AL591125.20| Mouse DNA sequence from clone RP23-438D7 on chromosome 11, complete
              sequence
          Length = 160284

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     gaaacttttacatgtaaaa 79
              |||||||||||||||||||
Sbjct: 119550 gaaacttttacatgtaaaa 119532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,449,971
Number of Sequences: 3902068
Number of extensions: 1449971
Number of successful extensions: 112025
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 111837
Number of HSP's gapped (non-prelim): 190
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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