ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast09d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009193.1| Triticum aestivum clone wle1.pk0001.d6:fis, full ... 107 1e-20
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
3dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
4dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
5dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
6dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
7dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
8ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa814... 56 5e-05
9emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004... 46 0.046
10gb|AC130209.3| Mus musculus BAC clone RP24-369J19 from chromosom... 44 0.18
11gb|AC117971.7| Rattus norvegicus 7 BAC CH230-393L21 (Children's ... 44 0.18
12gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complet... 44 0.18
13gb|AC158407.1| Mus musculus BAC RP23-23E11 (Roswell Park Cancer... 44 0.18
14emb|AL022098.1|HS510L9 Human DNA sequence from clone RP3-510L9 o... 42 0.71
15gb|AC130802.36| Medicago truncatula clone mth2-28b21, complete s... 42 0.71
16tpg|BK003401.1| TPA: TPA_inf: Drosophila melanogaster HDC02252 (... 42 0.71
17gb|AC009352.5| Drosophila melanogaster, chromosome 2L, region 34... 42 0.71
18gb|AC008332.11|AC008332 Drosophila melanogaster, chromosome 2L, ... 42 0.71
19gb|AE003638.2| Drosophila melanogaster chromosome 2L, section 47... 42 0.71
20gb|AC125070.4| Mus musculus BAC clone RP23-443A7 from 13, comple... 42 0.71
21ref|XM_549841.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
22gb|AC163703.4| Mus musculus BAC clone RP23-359B23 from chromosom... 40 2.8
23ref|XM_470696.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
24ref|NM_021350.1| Mus musculus choroideremia-like (Chml), mRNA 40 2.8
25gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete... 40 2.8
26gb|AC131320.8| Mus musculus chromosome 12, clone RP23-398E18, co... 40 2.8
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.8
28gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosom... 40 2.8
29gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosom... 40 2.8
30emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in ... 40 2.8
31ref|XM_746355.1| Aspergillus fumigatus Af293 multidrug resistant... 40 2.8
32gb|AC142110.4| Mus musculus BAC clone RP24-104I11 from chromosom... 40 2.8
33gb|AC124366.4| Mus musculus BAC clone RP24-541E9 from chromosome... 40 2.8
34gb|AC121967.3| Mus musculus BAC clone RP24-268P11 from chromosom... 40 2.8
35ref|XM_814455.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 2.8
36ref|XM_814922.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 2.8
37gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, compl... 40 2.8
38gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cance... 40 2.8
39emb|AL445586.6| Human DNA sequence from clone RP11-352F21 on chr... 40 2.8
40emb|AL136967.5| Human DNA sequence from clone RP1-149M18 on chro... 40 2.8
41gb|BT009594.1| Triticum aestivum clone wre1n.pk0066.e4:fis, full... 40 2.8
42gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 40 2.8
43ref|NM_001031531.1| Gallus gallus similar to RIKEN cDNA 5530600A... 40 2.8
44emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 2.8
45emb|AJ720204.1| Gallus gallus mRNA for hypothetical protein, clo... 40 2.8
46gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 2.8
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
48gb|AY780645.1| Lactobacillus reuteri CRL1098 cobalamin gene clus... 40 2.8
49gb|AC022120.7| Homo sapiens chromosome 5 clone CTC-570I13, compl... 40 2.8
50gb|AF482427.1| Mus musculus encephalopsin (Opn3) and choroiderem... 40 2.8
51dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
52emb|BX248985.6| Zebrafish DNA sequence from clone CH211-192N18 i... 40 2.8
53gb|AY940051.1| Mus musculus clone BAC UH-K8 genomic sequence 40 2.8
54ref|NM_211930.1| Eremothecium gossypii AGR202Wp (AGR202W), mRNA 40 2.8
55dbj|AK066672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
56gb|AF189156.1|AF189156 Mus musculus rab escort protein-2 (Chml) ... 40 2.8
57gb|AY109674.1| Zea mays CL12175_1 mRNA sequence 40 2.8
58gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 ... 40 2.8
59emb|CT025557.11| Mouse DNA sequence from clone RP23-356F21 on ch... 40 2.8
60gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 2.8
61gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosom... 40 2.8
62gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 40 2.8
63dbj|AP006107.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 2.8
64dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 2.8
65dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 2.8
66emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chrom... 40 2.8
67gb|L20860.1|HUMGLYIBBE Human glycoprotein Ib beta mRNA, complete... 40 2.8 
>gb|BT009193.1| Triticum aestivum clone wle1.pk0001.d6:fis, full insert mRNA sequence
          Length = 1342

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 160  aggctgggggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcga 219
            |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 aggctgagggtcagagcagcctggggctggtgtaggggccgtggaggatgctgtcggcga 1156

              
Query: 220  tg 221
            ||
Sbjct: 1155 tg 1154
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                     
Query: 168     ggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
               ||||| |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 6321066 ggtcagagcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 6321013



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aagcagaagcagaagcaggc 163
              ||||||||||||||||||||
Sbjct: 307544 aagcagaagcagaagcaggc 307525
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0515G01
          Length = 175072

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 168   ggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
             ||||| |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 92132 ggtcagagcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 92079
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>dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F10, full
            insert sequence
          Length = 1452

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 168  ggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
            ||||| |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 1190 ggtcagagcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 1137
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>dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E01, full
            insert sequence
          Length = 1520

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 168  ggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
            ||||| |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 1187 ggtcagagcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 1134
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>dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F05, full
            insert sequence
          Length = 1577

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 168  ggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
            ||||| |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 1190 ggtcagagcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 1137
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>dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B07, full
            insert sequence
          Length = 1691

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 168  ggtcaaagcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
            ||||| |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 1450 ggtcagagcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 1397
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>ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa8142 predicted mRNA
          Length = 1125

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 174  agcagcctggggctggtgtaggggccgtggaggatgctgtcggcgatg 221
            |||||||| ||||||||||| ||||| | ||||||||||| |||||||
Sbjct: 1121 agcagccttgggctggtgtaagggccattgaggatgctgttggcgatg 1074
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>emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004I9 on chromosome 20 Contains the
             3' end of a novel gene (LOC284788), complete sequence
          Length = 117757

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 169   gtcaaagcagcctggggctggtg 191
             |||||||||||||||||||||||
Sbjct: 38834 gtcaaagcagcctggggctggtg 38812
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>gb|AC130209.3| Mus musculus BAC clone RP24-369J19 from chromosome 6, complete
            sequence
          Length = 154867

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 140  agaaaagcagaagcagaagcag 161
            ||||||||||||||||||||||
Sbjct: 8732 agaaaagcagaagcagaagcag 8711
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>gb|AC117971.7| Rattus norvegicus 7 BAC CH230-393L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 80793

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 140   agaaaagcagaagcagaagcag 161
             ||||||||||||||||||||||
Sbjct: 65161 agaaaagcagaagcagaagcag 65182
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>gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complete sequence
          Length = 137457

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 140   agaaaagcagaagcagaagcag 161
             ||||||||||||||||||||||
Sbjct: 77512 agaaaagcagaagcagaagcag 77533
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>gb|AC158407.1| Mus musculus  BAC RP23-23E11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187033

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 140   agaaaagcagaagcagaagcag 161
             ||||||||||||||||||||||
Sbjct: 90456 agaaaagcagaagcagaagcag 90435
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>emb|AL022098.1|HS510L9 Human DNA sequence from clone RP3-510L9 on chromosome 6p24.1-25.3
             Contains part of the NEDD9 gene for neural precursor cell
             expressed (developmentally down-regulated) 9, complete
             sequence
          Length = 130753

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   agaacactagaaaagcagaag 152
             |||||||||||||||||||||
Sbjct: 50803 agaacactagaaaagcagaag 50783
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>gb|AC130802.36| Medicago truncatula clone mth2-28b21, complete sequence
          Length = 123626

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 142    aaaagcagaagcagaagcagg 162
              |||||||||||||||||||||
Sbjct: 110989 aaaagcagaagcagaagcagg 111009
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>tpg|BK003401.1| TPA: TPA_inf: Drosophila melanogaster HDC02252 (HDC02252) gene,
           complete cds
          Length = 2759

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 141 gaaaagcagaagcagaagcag 161
           |||||||||||||||||||||
Sbjct: 91  gaaaagcagaagcagaagcag 111
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>gb|AC009352.5| Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone
             BACR11M13, complete sequence
          Length = 190301

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   gaaaagcagaagcagaagcag 161
             |||||||||||||||||||||
Sbjct: 97873 gaaaagcagaagcagaagcag 97893
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>gb|AC008332.11|AC008332 Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone
             BACR48D10, complete sequence
          Length = 153250

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   gaaaagcagaagcagaagcag 161
             |||||||||||||||||||||
Sbjct: 38061 gaaaagcagaagcagaagcag 38081
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>gb|AE003638.2| Drosophila melanogaster chromosome 2L, section 47 of 83 of the complete
             sequence
          Length = 254309

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   gaaaagcagaagcagaagcag 161
             |||||||||||||||||||||
Sbjct: 41309 gaaaagcagaagcagaagcag 41329
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>gb|AC125070.4| Mus musculus BAC clone RP23-443A7 from 13, complete sequence
          Length = 208344

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   cagaagcagaagcaggctggg 167
             |||||||||||||||||||||
Sbjct: 34776 cagaagcagaagcaggctggg 34796
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>ref|XM_549841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 836

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 aagcagaagcagaagcaggc 163
           ||||||||||||||||||||
Sbjct: 224 aagcagaagcagaagcaggc 243
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>gb|AC163703.4| Mus musculus BAC clone RP23-359B23 from chromosome 8, complete sequence
          Length = 219082

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 83868 aagcagaagcagaagcaggc 83887
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>ref|XM_470696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 438

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 aaagcagaagcagaagcagg 162
           ||||||||||||||||||||
Sbjct: 378 aaagcagaagcagaagcagg 397
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>ref|NM_021350.1| Mus musculus choroideremia-like (Chml), mRNA
          Length = 1866

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aagcagaagcagaagcaggc 163
            ||||||||||||||||||||
Sbjct: 1595 aagcagaagcagaagcaggc 1614
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>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 57873 aagcagaagcagaagcaggc 57892
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>gb|AC131320.8| Mus musculus chromosome 12, clone RP23-398E18, complete sequence
          Length = 210230

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   aaaagcagaagcagaagcag 161
             ||||||||||||||||||||
Sbjct: 92649 aaaagcagaagcagaagcag 92630
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 143      aaagcagaagcagaagcagg 162
                ||||||||||||||||||||
Sbjct: 14596666 aaagcagaagcagaagcagg 14596685
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>gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosome 16, complete
             sequence
          Length = 196519

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   agaagcagaagcaggctggg 167
             ||||||||||||||||||||
Sbjct: 77484 agaagcagaagcaggctggg 77465
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>gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosome 6, complete sequence
          Length = 169094

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 67004 aagcagaagcagaagcaggc 67023
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>emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in linkage group 16,
             complete sequence
          Length = 149652

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   aaaagcagaagcagaagcaggctg 165
             |||| |||||||||||||||||||
Sbjct: 65330 aaaaacagaagcagaagcaggctg 65353
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>ref|XM_746355.1| Aspergillus fumigatus Af293 multidrug resistant protein
           (Afu4g13830) partial mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aaaagcagaagcagaagcag 161
           ||||||||||||||||||||
Sbjct: 48  aaaagcagaagcagaagcag 67
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>gb|AC142110.4| Mus musculus BAC clone RP24-104I11 from chromosome 7, complete sequence
          Length = 177085

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   agcagaagcagaagcaggct 164
             ||||||||||||||||||||
Sbjct: 83260 agcagaagcagaagcaggct 83241
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>gb|AC124366.4| Mus musculus BAC clone RP24-541E9 from chromosome 1, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aagcagaagcagaagcaggc 163
              ||||||||||||||||||||
Sbjct: 128779 aagcagaagcagaagcaggc 128760
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>gb|AC121967.3| Mus musculus BAC clone RP24-268P11 from chromosome 19, complete
             sequence
          Length = 185775

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 31326 aagcagaagcagaagcaggc 31345
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>ref|XM_814455.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053507957.200) partial mRNA
          Length = 1584

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aaaagcagaagcagaagcag 161
           ||||||||||||||||||||
Sbjct: 432 aaaagcagaagcagaagcag 451



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aaaagcagaagcagaagcag 161
           ||||||||||||||||||||
Sbjct: 228 aaaagcagaagcagaagcag 247
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>ref|XM_814922.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053504239.220) partial mRNA
          Length = 1524

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aaaagcagaagcagaagcag 161
           ||||||||||||||||||||
Sbjct: 432 aaaagcagaagcagaagcag 451



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aaaagcagaagcagaagcag 161
           ||||||||||||||||||||
Sbjct: 228 aaaagcagaagcagaagcag 247
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>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aagcagaagcagaagcaggc 163
              ||||||||||||||||||||
Sbjct: 202305 aagcagaagcagaagcaggc 202286
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>gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 200439

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 49026 aagcagaagcagaagcaggc 49007
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>emb|AL445586.6| Human DNA sequence from clone RP11-352F21 on chromosome 9, complete
             sequence
          Length = 198498

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aaaagcagaagcagaagcag 161
             ||||||||||||||||||||
Sbjct: 73471 aaaagcagaagcagaagcag 73490
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>emb|AL136967.5| Human DNA sequence from clone RP1-149M18 on chromosome 6 Contains the
             NCR2 gene for natural cytotoxicity triggering receptor 2
             and four CpG islands, complete sequence
          Length = 115295

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 143   aaagcagaagcagaagcaggctgggggt 170
             |||||||||||||||| ||| |||||||
Sbjct: 93369 aaagcagaagcagaaggaggttgggggt 93396
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>gb|BT009594.1| Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA
           sequence
          Length = 1260

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 agcagaagcagaagcaggct 164
           ||||||||||||||||||||
Sbjct: 599 agcagaagcagaagcaggct 618
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>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
             sequence
          Length = 147130

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   aaagcagaagcagaagcagg 162
             ||||||||||||||||||||
Sbjct: 61045 aaagcagaagcagaagcagg 61026
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>ref|NM_001031531.1| Gallus gallus similar to RIKEN cDNA 5530600A18 (LOC428678), mRNA
          Length = 2988

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   taacaggcagtacatcactt 39
            ||||||||||||||||||||
Sbjct: 1573 taacaggcagtacatcactt 1554
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    cttgcttaacaagcaagaac 136
              ||||||||||||||||||||
Sbjct: 220026 cttgcttaacaagcaagaac 220007
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>emb|AJ720204.1| Gallus gallus mRNA for hypothetical protein, clone 12j7
          Length = 2988

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   taacaggcagtacatcactt 39
            ||||||||||||||||||||
Sbjct: 1573 taacaggcagtacatcactt 1554
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
               complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     aaaagcagaagcagaagcag 161
               ||||||||||||||||||||
Sbjct: 1132147 aaaagcagaagcagaagcag 1132166
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 143      aaagcagaagcagaagcagg 162
                ||||||||||||||||||||
Sbjct: 14591641 aaagcagaagcagaagcagg 14591660
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>gb|AY780645.1| Lactobacillus reuteri CRL1098 cobalamin gene cluster, partial sequence
          Length = 43444

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   cactagaaaagcagaagcag 155
             ||||||||||||||||||||
Sbjct: 40393 cactagaaaagcagaagcag 40412
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>gb|AC022120.7| Homo sapiens chromosome 5 clone CTC-570I13, complete sequence
          Length = 169513

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aagcagaagcagaagcaggc 163
              ||||||||||||||||||||
Sbjct: 105341 aagcagaagcagaagcaggc 105322
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>gb|AF482427.1| Mus musculus encephalopsin (Opn3) and choroideremia-like protein
            (Chml) genes; and kynurenine 3-monooxygenase (Kmo) gene,
            partial cds
          Length = 34186

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aagcagaagcagaagcaggc 163
            ||||||||||||||||||||
Sbjct: 5845 aagcagaagcagaagcaggc 5864
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0005A05
          Length = 190834

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 59382 aagcagaagcagaagcaggc 59363
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>emb|BX248985.6| Zebrafish DNA sequence from clone CH211-192N18 in linkage group 12,
              complete sequence
          Length = 167140

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    aaaagcagaagcagaagcag 161
              ||||||||||||||||||||
Sbjct: 105508 aaaagcagaagcagaagcag 105527
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>gb|AY940051.1| Mus musculus clone BAC UH-K8 genomic sequence
          Length = 6077

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aagcagaagcagaagcaggc 163
            ||||||||||||||||||||
Sbjct: 4844 aagcagaagcagaagcaggc 4863
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>ref|NM_211930.1| Eremothecium gossypii AGR202Wp (AGR202W), mRNA
          Length = 6819

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aaaagcagaagcagaagcag 161
           ||||||||||||||||||||
Sbjct: 38  aaaagcagaagcagaagcag 57
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>dbj|AK066672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F21, full
           insert sequence
          Length = 837

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 aagcagaagcagaagcaggc 163
           ||||||||||||||||||||
Sbjct: 224 aagcagaagcagaagcaggc 243
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>gb|AF189156.1|AF189156 Mus musculus rab escort protein-2 (Chml) gene, complete cds
          Length = 3141

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aagcagaagcagaagcaggc 163
            ||||||||||||||||||||
Sbjct: 2363 aagcagaagcagaagcaggc 2382
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>gb|AY109674.1| Zea mays CL12175_1 mRNA sequence
          Length = 765

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 aagcagaagcagaagcaggc 163
           ||||||||||||||||||||
Sbjct: 526 aagcagaagcagaagcaggc 507
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>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete
             sequence
          Length = 323840

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcagaagcagaagcaggc 163
             ||||||||||||||||||||
Sbjct: 92947 aagcagaagcagaagcaggc 92966
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>emb|CT025557.11| Mouse DNA sequence from clone RP23-356F21 on chromosome 13, complete
              sequence
          Length = 186496

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aagcagaagcagaagcaggc 163
              ||||||||||||||||||||
Sbjct: 116863 aagcagaagcagaagcaggc 116882
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     aaaagcagaagcagaagcag 161
               ||||||||||||||||||||
Sbjct: 4910036 aaaagcagaagcagaagcag 4910055
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>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete
            sequence
          Length = 195034

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  aagcagaagcagaagcaggc 163
            ||||||||||||||||||||
Sbjct: 1762 aagcagaagcagaagcaggc 1743
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    aaagcagaagcagaagcagg 162
              ||||||||||||||||||||
Sbjct: 626405 aaagcagaagcagaagcagg 626424
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>dbj|AP006107.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT29P11, TM0193,
             complete sequence
          Length = 102354

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aaaagcagaagcagaagcag 161
             ||||||||||||||||||||
Sbjct: 98335 aaaagcagaagcagaagcag 98354
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>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
              complete sequence
          Length = 185320

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    aaaagcagaagcagaagcag 161
              ||||||||||||||||||||
Sbjct: 182261 aaaagcagaagcagaagcag 182242
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>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017,
             complete sequence
          Length = 121127

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   aaaagcagaagcagaagcag 161
             ||||||||||||||||||||
Sbjct: 10301 aaaagcagaagcagaagcag 10282
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>emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chromosome 2, complete
            sequence
          Length = 142905

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 143  aaagcagaagcagaagcagg 162
            ||||||||||||||||||||
Sbjct: 8809 aaagcagaagcagaagcagg 8790
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>gb|L20860.1|HUMGLYIBBE Human glycoprotein Ib beta mRNA, complete cds
          Length = 2793

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 190  tgtaggggccgtggaggatgctgt 213
            |||||||||||||||||| |||||
Sbjct: 2637 tgtaggggccgtggaggacgctgt 2660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,999,396
Number of Sequences: 3902068
Number of extensions: 1999396
Number of successful extensions: 172748
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 172262
Number of HSP's gapped (non-prelim): 486
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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