>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score =  452 bits (228), Expect = e-124
 Identities = 228/228 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacaagcccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggctaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 aacaagcccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggctaa 1352

                                                                        
Query: 61   aacattaggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttgtat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 aacattaggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttgtat 1292

                                                                        
Query: 121  ataaagtttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttattgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 ataaagtttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttattgg 1232

                                                            
Query: 181  aactcaaattccgtaacgaaacacagcaacgaatattgacgaacccac 228
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 aactcaaattccgtaacgaaacacagcaacgaatattgacgaacccac 1184

>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 134  taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 193
            |||||||||||||||| |||||||||| | |||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

                    
Query: 194  taacgaaa 201
            ||| ||||
Sbjct: 1359 taatgaaa 1352



 Score = 46.1 bits (23), Expect = 0.047
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                        
Query: 21   caacgttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagtt 79
            |||| |||||||||| |||||||||| || |||| |||| |||||| || ||||||||||
Sbjct: 1527 caacattgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagtt 1469

                       
Query: 80   ccgcaaaaagc 90
            | | |||||||
Sbjct: 1468 ctgtaaaaagc 1458

>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 128  ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 186
            ||||||| |||||||| |||||| ||| |||  ||||| || |  |||||||||||||||
Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625

                           
Query: 187  aattccgtaacgaaa 201
            |||||||||| ||||
Sbjct: 1624 aattccgtaatgaaa 1610

>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 177 ttggaactcaaattccgtaacgaaa 201
           |||||||||||||||||||| ||||
Sbjct: 921 ttggaactcaaattccgtaatgaaa 897

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     taattgatttagggaagtgc 51
              ||||||||||||||||||||
Sbjct: 657464 taattgatttagggaagtgc 657445

>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence
          Length = 35325

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aaagtttctaataatacaat 142
             ||||||||||||||||||||
Sbjct: 20319 aaagtttctaataatacaat 20300

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 21      caacgttgctataattgatttagg 44
               |||| |||||||||||||||||||
Sbjct: 9412547 caacattgctataattgatttagg 9412524



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 128     ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403

>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    aaagtttctaataatacaat 142
              ||||||||||||||||||||
Sbjct: 103537 aaagtttctaataatacaat 103518

>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18,
              complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    taaagtttctaataatacaa 141
              ||||||||||||||||||||
Sbjct: 107638 taaagtttctaataatacaa 107657

>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence
          Length = 195101

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tatataaagtttctaataat 137
             ||||||||||||||||||||
Sbjct: 13115 tatataaagtttctaataat 13096

>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     caacgttgctataattgatttagg 44
              |||| |||||||||||||||||||
Sbjct: 109947 caacattgctataattgatttagg 109924



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 128    ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
              ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803

>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 gacaaaggtgtaattggttt 175
           ||||||||||||||||||||
Sbjct: 337 gacaaaggtgtaattggttt 318

>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gacaaaggtgtaattggttt 175
             ||||||||||||||||||||
Sbjct: 76946 gacaaaggtgtaattggttt 76927

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 21      caacgttgctataattgatttagg 44
               |||| |||||||||||||||||||
Sbjct: 9410668 caacattgctataattgatttagg 9410645



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 128     ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524

>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   caacgttgctataattgatttagg 44
            |||| |||||||||||||||||||
Sbjct: 1797 caacattgctataattgatttagg 1774



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 128  ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653

>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
              complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    taaagtttctaataatacaa 141
              ||||||||||||||||||||
Sbjct: 165685 taaagtttctaataatacaa 165666

>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 21  caacgttgctataattgatttagg 44
           |||| |||||||||||||||||||
Sbjct: 462 caacattgctataattgatttagg 439



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 128 ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
           ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318

>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   caacgttgctataattgatttagg 44
            |||| |||||||||||||||||||
Sbjct: 1408 caacattgctataattgatttagg 1385



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 128  ttctaataatacaatctttcaagtgaacgacaaaggtgta 167
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,944,062
Number of Sequences: 3902068
Number of extensions: 1944062
Number of successful extensions: 33401
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33336
Number of HSP's gapped (non-prelim): 65
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)