ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast08h03 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_PYRAE (Q8ZVG2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 799 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 281 WRLARFIAPRPRPTQTPRIGVLAPIDRSI 367 W ++RF+ P P Q P+ LAP+DR++ Sbjct: 588 WNISRFVLSFPEPQQKPQ---LAPVDRAL 613
>SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)| (Isoleucine--tRNA ligase) (IleRS) Length = 1064 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +3 Query: 51 DTHTHMLAHNRPPDDAMRRTL*SILAHVMSCW*EPGDPRYHRRHLPIFAVVVIKH 215 D H + H P + TL + + V CW E G Y RH P + KH Sbjct: 494 DIHRDSIDHITIPSKKGKGTLHRV-SEVFDCWFESGSMPYASRHYPFERIEEFKH 547
>RPA1_RAT (O54889) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1716 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -2 Query: 119 ASKRSPHCIIGRAVVRK 69 A+KR PHC GR+VVRK Sbjct: 201 AAKRCPHCKTGRSVVRK 217
>ASSY_AQUAE (O67213) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 401 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 85 RPMMQCGERFEASWRTSCHAGESPGTHGI 171 +P+ GER+E W+ + E G HG+ Sbjct: 226 KPVYLNGERYEEQWKLIANLNEIAGRHGV 254
>TRYX_GADMO (Q91041) Trypsin-10 precursor (EC 3.4.21.4) (Trypsin X)| Length = 241 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%) Frame = -3 Query: 262 GDNLRKILDGR*DKIRCLMTTTAKIGRWRR*YRGSPGSHQHDMTCAKMLQSVRRIA---S 92 G+ + + DG DK++CL Y PG M CA L+ + S Sbjct: 141 GNTMSSVDDG--DKLQCLNLPILSHADCANSY---PGMITQSMFCAGYLEGGKDSCQGDS 195 Query: 91 SGGRLCASMCVCVSIWPYGCTYMEN 17 G +C + V W YGC +N Sbjct: 196 GGPVVCNGVLQGVVSWGYGCAERDN 220
>SPON1_XENLA (P35447) Spondin-1 precursor (F-spondin)| Length = 803 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 248 KDIRREIRQNQVLDDDDCEDWKVAAMIPW 162 KD R + R ++ +D D E + V M PW Sbjct: 728 KDAREKRRSEKIKEDSDGEQYPVCKMKPW 756
>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 119 ASKRSPHCIIGRAVVRK 69 A+K+ PHC GR+VVRK Sbjct: 201 AAKQCPHCKTGRSVVRK 217
>RPA1_HUMAN (O95602) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -2 Query: 116 SKRSPHCIIGRAVVRK 69 +KR PHC GR+VVRK Sbjct: 202 AKRCPHCKTGRSVVRK 217
>SYI_NOCFA (Q5YYW9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1042 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 87 PDDAMRRTL*SILAHVMSCW*EPGDPRYHRRHLP 188 PDD R++ + V+ CW E G Y + H P Sbjct: 527 PDDPTGRSMMRRVPEVLDCWFESGSMPYAQVHYP 560
>HIS5_YEAST (P33734) Imidazole glycerol phosphate synthase hisHF (IGP synthase)| (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] Length = 552 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 Query: 375 KKPIDRSIGASTPILGVCVGL 313 +KPI I + PI+G+CVGL Sbjct: 66 EKPIREYIESGKPIMGICVGL 86
>GUAAA_METJA (Q58970) GMP synthase [glutamine-hydrolyzing] subunit A (EC| 6.3.5.2) (Glutamine amidotransferase) Length = 188 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 378 AKKPIDRSIGASTPILGVCVGLGLGAM 298 AK ID ++ A PILG+C+G L A+ Sbjct: 58 AKNCIDIALNAKLPILGICLGHQLIAL 84
>DMF1_SCHPO (P78953) Division mal foutue 1 protein| Length = 920 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 21 SMYVHPYGHIDTHTHMLAHNRPPDDAMRRTL*SILAHVMS 140 SMY+H YGH+D+ + PD+ R + S+ + S Sbjct: 83 SMYMHGYGHLDS---SFSSQHSPDNRKRMSSTSVFKRINS 119
>SYI_EHRRW (Q5HB43) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1117 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +3 Query: 87 PDDAMRRTL*SILAHVMSCW*EPGDPRYHRRHLPIFAVVVIKHLILSYLPSN 242 PDD +++ + V CW E G Y + H P K L +Y P++ Sbjct: 555 PDDPTGKSMMRRVTDVFDCWFESGSMPYAQLHYPF----ENKELFENYFPAD 602
>SYI_EHRRG (Q5FH91) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1118 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +3 Query: 87 PDDAMRRTL*SILAHVMSCW*EPGDPRYHRRHLPIFAVVVIKHLILSYLPSN 242 PDD +++ + V CW E G Y + H P K L +Y P++ Sbjct: 555 PDDPTGKSMMRRVTDVFDCWFESGSMPYAQLHYPF----ENKELFENYFPAD 602 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,673,682 Number of Sequences: 219361 Number of extensions: 1120763 Number of successful extensions: 3355 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3344 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
