Clone Information

BLAST Search Result

Clone Name	rbast08h02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_187347.2\| Oryza sativa (japonica cultivar-group), mRNA	119	6e-24
2	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	6e-24
3	dbj\|AP003956.5\| Oryza sativa (japonica cultivar-group) genomic D...	119	6e-24
4	dbj\|AP003864.4\| Oryza sativa (japonica cultivar-group) genomic D...	119	6e-24
5	dbj\|AK070990.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	6e-24
6	gb\|AY104575.1\| Zea mays PCO138774 mRNA sequence	68	2e-08
7	gb\|BT018156.1\| Zea mays clone EL01N0556B05.c mRNA sequence	46	0.071
8	ref\|NM_174259.2\| Bos taurus calpain 1, (mu/I) large subunit (CAP...	42	1.1
9	emb\|AL590286.12\| Human DNA sequence from clone RP11-157L10 on ch...	42	1.1
10	emb\|AL356137.10\| Human DNA sequence from clone RP11-515I12 on ch...	42	1.1
11	emb\|AL137182.9\| Human DNA sequence from clone RP1-257A15 on chro...	42	1.1
12	gb\|AC183605.3\| Pan troglodytes BAC clone CH251-334E18 from chrom...	42	1.1
13	gb\|AC092318.2\| Homo sapiens chromosome 5 clone RPCI-1_86A12, com...	42	1.1
14	ref\|XM_695430.1\| PREDICTED: Danio rerio similar to FAT tumor sup...	42	1.1
15	dbj\|BS000205.2\| Pan troglodytes chromosome 22 clone:RP43-093B21,...	42	1.1
16	gb\|AF221129.1\|AF221129 Bos taurus micromolar calcium-dependent n...	42	1.1
17	gb\|AC004021.1\|AC004021 Human PAC clone RP1-186K10 from 5q31, com...	42	1.1
18	emb\|CR388051.22\| Zebrafish DNA sequence from clone CH211-239B6 i...	42	1.1
19	dbj\|AP001694.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	42	1.1
20	dbj\|AP003392.2\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	1.1
21	gb\|AC004391.1\|AC004391 Homo sapiens Cosmid g5129s018, complete s...	42	1.1
22	dbj\|AP000228.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	42	1.1
23	dbj\|AP000140.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	42	1.1
24	dbj\|AP000088.1\| Homo sapiens genomic DNA of 21q22.1, APP related...	42	1.1
25	gb\|AE006312.1\| Lactococcus lactis subsp. lactis IL1403 section 7...	40	4.4
26	gb\|AC124410.4\| Mus musculus BAC clone RP24-266J11 from chromosom...	40	4.4
27	emb\|BX248419.4\| Human DNA sequence from clone DASS-254G14 on chr...	40	4.4
28	emb\|AL844220.3\| Human DNA sequence from clone DAQB-44E15 on chro...	40	4.4
29	emb\|AL662832.5\| Human DNA sequence from clone XXbac-141O14 on ch...	40	4.4
30	emb\|AL662782.3\| Human DNA sequence from clone XXbac-252N6 on chr...	40	4.4
31	emb\|AL513011.7\| Human DNA sequence from clone RP11-284O5 on chro...	40	4.4
32	emb\|AL080284.20\|HSJ177I10 Human DNA sequence from clone RP1-177I...	40	4.4
33	emb\|AL109853.4\|HSJ765F13 Human DNA sequence from clone RP4-765F1...	40	4.4
34	gb\|AC131053.2\| Homo sapiens chromosome 18, clone RP11-348G23, co...	40	4.4
35	emb\|CR388382.5\| Human DNA sequence from clone DADB-23P23 on chro...	40	4.4
36	gb\|AC010188.29\| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Ca...	40	4.4
37	emb\|AL672026.11\| Mouse DNA sequence from clone RP23-403O11 on ch...	40	4.4
38	gb\|AC099848.2\| Homo sapiens chromosome 18, clone RP11-856F24, co...	40	4.4
39	gb\|AC163694.2\| Mus musculus BAC clone RP24-80O2 from chromosome ...	40	4.4
40	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
41	emb\|BX927189.6\| Human DNA sequence from clone DAMA-83L10 on chro...	40	4.4
42	gb\|AC046135.15\| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Can...	40	4.4
43	gb\|AC158314.5\| Mus musculus chromosome 7, clone RP23-145E21, com...	40	4.4
44	gb\|AC008506.7\|AC008506 Homo sapiens chromosome 5 clone CTC-447O6...	40	4.4
45	dbj\|BA000025.2\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	4.4
46	dbj\|AP005633.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
47	dbj\|AP005392.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
48	dbj\|BA000041.2\| Pan troglodytes DNA, major histocompatibility co...	40	4.4
49	gb\|AF042275.1\|AF042275 Oryza sativa anther-specific protein gene...	40	4.4
50	emb\|BX247867.7\| Zebrafish DNA sequence from clone CH211-268D5 in...	40	4.4
51	gb\|AC004191.1\|AC004191 Homo sapiens clone UWGC:y18c296 from 6p21...	40	4.4
52	emb\|AL844145.9\| Mouse DNA sequence from clone RP23-403F4 on chro...	40	4.4
53	dbj\|AB023053.1\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	4.4

>ref|NM_187347.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 935

 Score =  119 bits (60), Expect = 6e-24
 Identities = 128/147 (87%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 110 attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtctttctttgaga 169
           ||||||||||||| ||||||| || ||||| |||||||||| |    ||| |||||||||
Sbjct: 888 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 830

                                                                       
Query: 170 tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 227
           ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 829 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 771

                                      
Query: 228 tcaactcacattctaaagatgtagatg 254
           ||| ||||||||||||| ||| |||||
Sbjct: 770 tcagctcacattctaaaaatgaagatg 744



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 285 atcaaccagtcaatgcagcattgagcgcactgtgaacatccactcc 330
           ||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 705 atcaaccagccaaagcggcattgagcgcactgtgaacatccactcc 660

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 6e-24
 Identities = 128/147 (87%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                            
Query: 110      attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtctttctttgaga 169
                ||||||||||||| ||||||| || ||||| |||||||||| |    ||| |||||||||
Sbjct: 18479015 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 18479073

                                                                            
Query: 170      tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 227
                ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 18479074 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 18479132

                                           
Query: 228      tcaactcacattctaaagatgtagatg 254
                ||| ||||||||||||| ||| |||||
Sbjct: 18479133 tcagctcacattctaaaaatgaagatg 18479159



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                              
Query: 285      atcaaccagtcaatgcagcattgagcgcactgtgaacatccactcc 330
                ||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 18479198 atcaaccagccaaagcggcattgagcgcactgtgaacatccactcc 18479243

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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1457_D07
          Length = 103688

 Score =  119 bits (60), Expect = 6e-24
 Identities = 128/147 (87%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                        
Query: 110  attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtctttctttgaga 169
            ||||||||||||| ||||||| || ||||| |||||||||| |    ||| |||||||||
Sbjct: 7771 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 7829

                                                                        
Query: 170  tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 227
            ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 7830 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 7888

                                       
Query: 228  tcaactcacattctaaagatgtagatg 254
            ||| ||||||||||||| ||| |||||
Sbjct: 7889 tcagctcacattctaaaaatgaagatg 7915



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                          
Query: 285  atcaaccagtcaatgcagcattgagcgcactgtgaacatccactcc 330
            ||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 7954 atcaaccagccaaagcggcattgagcgcactgtgaacatccactcc 7999

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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score =  119 bits (60), Expect = 6e-24
 Identities = 128/147 (87%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 110   attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtctttctttgaga 169
             ||||||||||||| ||||||| || ||||| |||||||||| |    ||| |||||||||
Sbjct: 70863 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 70921

                                                                         
Query: 170   tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 227
             ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 70922 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 70980

                                        
Query: 228   tcaactcacattctaaagatgtagatg 254
             ||| ||||||||||||| ||| |||||
Sbjct: 70981 tcagctcacattctaaaaatgaagatg 71007



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                           
Query: 285   atcaaccagtcaatgcagcattgagcgcactgtgaacatccactcc 330
             ||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 71046 atcaaccagccaaagcggcattgagcgcactgtgaacatccactcc 71091

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>dbj|AK070990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O13, full
           insert sequence
          Length = 935

 Score =  119 bits (60), Expect = 6e-24
 Identities = 128/147 (87%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 110 attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtctttctttgaga 169
           ||||||||||||| ||||||| || ||||| |||||||||| |    ||| |||||||||
Sbjct: 888 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 830

                                                                       
Query: 170 tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 227
           ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 829 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 771

                                      
Query: 228 tcaactcacattctaaagatgtagatg 254
           ||| ||||||||||||| ||| |||||
Sbjct: 770 tcagctcacattctaaaaatgaagatg 744



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 285 atcaaccagtcaatgcagcattgagcgcactgtgaacatccactcc 330
           ||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 705 atcaaccagccaaagcggcattgagcgcactgtgaacatccactcc 660

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>gb|AY104575.1| Zea mays PCO138774 mRNA sequence
          Length = 1041

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 288 aaccagtcaatgcagcattgagcgcactgtgaacatccactccgat 333
           |||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 719 aaccggtcaatgcagcattgagcgcactgtgaacatcgacaccgat 674

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>gb|BT018156.1| Zea mays clone EL01N0556B05.c mRNA sequence
          Length = 429

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 295 caatgcagcattgagcgcactgtgaacatccactccgat 333
           ||||||||||||| | |||||| ||||||| ||||||||
Sbjct: 116 caatgcagcattgggggcactgggaacatcgactccgat 78

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>ref|NM_174259.2| Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA
          Length = 2948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  cattgagtttgcaggcttcaa 231
            |||||||||||||||||||||
Sbjct: 2012 cattgagtttgcaggcttcaa 2032

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>emb|AL590286.12| Human DNA sequence from clone RP11-157L10 on chromosome 6 Contains a
             ribosomal protein L34 (RPL34) pseudogene, complete
             sequence
          Length = 65756

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 104   attaccattacaaaaatccttgcag 128
             ||||||||||||||||| |||||||
Sbjct: 65442 attaccattacaaaaatacttgcag 65418

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>emb|AL356137.10| Human DNA sequence from clone RP11-515I12 on chromosome 6, complete
             sequence
          Length = 135837

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   aaatattaccattacaaaaat 120
             |||||||||||||||||||||
Sbjct: 54994 aaatattaccattacaaaaat 55014

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>emb|AL137182.9| Human DNA sequence from clone RP1-257A15 on chromosome 6 Contains
            part of a novel gene, part of the gene for a novel
            protein (FLJ32724) and a CpG island, complete sequence
          Length = 120988

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 104  attaccattacaaaaatccttgcag 128
            ||||||||||||||||| |||||||
Sbjct: 1686 attaccattacaaaaatacttgcag 1662

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>gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chromosome 4, complete
              sequence
          Length = 191017

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 134    gaagttgaaagaagaaataca 154
              |||||||||||||||||||||
Sbjct: 162788 gaagttgaaagaagaaataca 162808

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>gb|AC092318.2| Homo sapiens chromosome 5 clone RPCI-1_86A12, complete sequence
          Length = 91803

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   gatggagtataatttatttaa 188
             |||||||||||||||||||||
Sbjct: 39942 gatggagtataatttatttaa 39922

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>ref|XM_695430.1| PREDICTED: Danio rerio similar to FAT tumor suppressor homolog 3
           (LOC571803), partial mRNA
          Length = 2850

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 118 aatccttgcaggactcgaagt 138
           |||||||||||||||||||||
Sbjct: 672 aatccttgcaggactcgaagt 652

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>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete
             sequences
          Length = 203521

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agatcattccctccatcctca 208
             |||||||||||||||||||||
Sbjct: 39616 agatcattccctccatcctca 39596

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>gb|AF221129.1|AF221129 Bos taurus micromolar calcium-dependent neutral protease large
            subunit (CAPN1) mRNA, complete cds
          Length = 2948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  cattgagtttgcaggcttcaa 231
            |||||||||||||||||||||
Sbjct: 2012 cattgagtttgcaggcttcaa 2032

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>gb|AC004021.1|AC004021 Human PAC clone RP1-186K10 from 5q31, complete sequence
          Length = 171370

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    gatggagtataatttatttaa 188
              |||||||||||||||||||||
Sbjct: 156928 gatggagtataatttatttaa 156908

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>emb|CR388051.22| Zebrafish DNA sequence from clone CH211-239B6 in linkage group 15,
            complete sequence
          Length = 120027

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  aatccttgcaggactcgaagt 138
            |||||||||||||||||||||
Sbjct: 3339 aatccttgcaggactcgaagt 3359

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>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    agatcattccctccatcctca 208
              |||||||||||||||||||||
Sbjct: 234321 agatcattccctccatcctca 234301

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>dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-110I1, complete
              sequence
          Length = 178341

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 141    aaagaagaaatacaagtcttt 161
              |||||||||||||||||||||
Sbjct: 155982 aaagaagaaatacaagtcttt 155962

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>gb|AC004391.1|AC004391 Homo sapiens Cosmid g5129s018, complete sequence
          Length = 38649

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  aaatattaccattacaaaaat 120
            |||||||||||||||||||||
Sbjct: 5274 aaatattaccattacaaaaat 5294

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>dbj|AP000228.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
             clone:R49K20, complete sequence
          Length = 75698

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agatcattccctccatcctca 208
             |||||||||||||||||||||
Sbjct: 27823 agatcattccctccatcctca 27803

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>dbj|AP000140.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 5/10, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agatcattccctccatcctca 208
             |||||||||||||||||||||
Sbjct: 33617 agatcattccctccatcctca 33597

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>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
             region, segment 5/7
          Length = 161014

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agatcattccctccatcctca 208
             |||||||||||||||||||||
Sbjct: 33617 agatcattccctccatcctca 33597

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>gb|AE006312.1| Lactococcus lactis subsp. lactis IL1403 section 74 of 218 of the
            complete genome
          Length = 10348

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  ccagtcaatgcagcattgag 309
            ||||||||||||||||||||
Sbjct: 5936 ccagtcaatgcagcattgag 5955

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>gb|AC124410.4| Mus musculus BAC clone RP24-266J11 from chromosome 7, complete sequence
          Length = 162876

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     agcacttgattttggaacac 95
              ||||||||||||||||||||
Sbjct: 101450 agcacttgattttggaacac 101469

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>emb|BX248419.4| Human DNA sequence from clone DASS-254G14 on chromosome 6, complete
             sequence
          Length = 122321

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 81150 aaaagaacatcaaaatgtaa 81131

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>emb|AL844220.3| Human DNA sequence from clone DAQB-44E15 on chromosome 6 Contains the
             TRIM10 gene for tripartite motif-containing 10, the TRIM15
             gene for tripartite motif-containing 15, the TRIM26 gene
             for tripartite motif-containing 26, the PAIP1P1 pseudogene
             for poly(A) binding protein interacting protein 1
             pseudogene 1, the HCG17 gene for HLA complex group 17, the
             TRIM26P pseudogene for tripartite motif-containing 26, the
             HLA-L pseudogene for major histocompatibility complex,
             class I, L, the 3' end of the HCG18 gene for HLA complex
             group 18 and 3 CpG islands, complete sequence
          Length = 152298

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 97570 aaaagaacatcaaaatgtaa 97551

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>emb|AL662832.5| Human DNA sequence from clone XXbac-141O14 on chromosome 6 contains the
             5' end of the TRIM26 gene for tripartite motif containing
             26, two putative novel transcript, a  tripartite motif
             containing 26 (TRIM26) pseudogene, a MHC class 1
             pseudogene, the TRIM39 gene for tripartite motif
             containing 39, the RPP21 gene for ribonuclease p subunit
             and four CpG islands, complete sequence
          Length = 161348

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 57065 aaaagaacatcaaaatgtaa 57046

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>emb|AL662782.3| Human DNA sequence from clone XXbac-252N6 on chromosome 6 contains a
             putative novel transcript, a tripartite motif containing
             26 (TRIM26) pseudogene, a MHC class 1 pseudogene and two
             CpG islands, complete sequence
          Length = 62456

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 40354 aaaagaacatcaaaatgtaa 40335

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>emb|AL513011.7| Human DNA sequence from clone RP11-284O5 on chromosome 6, complete
             sequence
          Length = 157204

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    agtaaaatattaccattacaaaaa 119
             ||||||||||||||||| ||||||
Sbjct: 94656 agtaaaatattaccattgcaaaaa 94679

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>emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I10 on chromosome 6q16.1-16.3
              Contains a novel gene, complete sequence
          Length = 160750

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    gaacatcaaaatgtaagatg 278
              ||||||||||||||||||||
Sbjct: 130820 gaacatcaaaatgtaagatg 130801

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>emb|AL109853.4|HSJ765F13 Human DNA sequence from clone RP4-765F13 on chromosome Xq25-26.2
             Contains two seven transmembrane helix receptor
             pseudogenes and the gene for a novel protein similar to
             part of hepatoma-derived growth factor (high-mobility
             group protein 1-like) (HDGF), complete sequence
          Length = 106465

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tctttctttgagatggagta 176
             ||||||||||||||||||||
Sbjct: 20840 tctttctttgagatggagta 20859

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>gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, complete sequence
          Length = 191115

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aagttgaaagaagaaataca 154
              ||||||||||||||||||||
Sbjct: 163525 aagttgaaagaagaaataca 163506

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>emb|CR388382.5| Human DNA sequence from clone DADB-23P23 on chromosome 6, complete
             sequence
          Length = 109067

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 85364 aaaagaacatcaaaatgtaa 85345

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>gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 158591

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tataatttatttaagatcat 194
             ||||||||||||||||||||
Sbjct: 14142 tataatttatttaagatcat 14123

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>emb|AL672026.11| Mouse DNA sequence from clone RP23-403O11 on chromosome X, complete
              sequence
          Length = 200566

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 261    acatcaaaatgtaagatgtctgtc 284
              |||||||||||||| |||||||||
Sbjct: 109326 acatcaaaatgtaatatgtctgtc 109303



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 261   acatcaaaatgtaagatgtctgtc 284
             |||||||||||||| |||||||||
Sbjct: 72192 acatcaaaatgtaatatgtctgtc 72215

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>gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, complete sequence
          Length = 132288

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aagttgaaagaagaaataca 154
             ||||||||||||||||||||
Sbjct: 97611 aagttgaaagaagaaataca 97592

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>gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome 16, complete sequence
          Length = 244730

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     taaaatattaccattacaaa 117
              ||||||||||||||||||||
Sbjct: 156887 taaaatattaccattacaaa 156868

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 251      gatgaaaagaacatcaaaat 270
                ||||||||||||||||||||
Sbjct: 18401920 gatgaaaagaacatcaaaat 18401901

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>emb|BX927189.6| Human DNA sequence from clone DAMA-83L10 on chromosome 6, complete
             sequence
          Length = 124330

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 52579 aaaagaacatcaaaatgtaa 52560

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>gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175833

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    tataatttatttaagatcat 194
              ||||||||||||||||||||
Sbjct: 153293 tataatttatttaagatcat 153312

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>gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, complete sequence
          Length = 185668

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    taaagatgtagatgaaaaga 260
              ||||||||||||||||||||
Sbjct: 119117 taaagatgtagatgaaaaga 119098

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>gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6, complete sequence
          Length = 191557

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    tttgagatggagtataattt 182
              ||||||||||||||||||||
Sbjct: 169055 tttgagatggagtataattt 169074

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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     aaaagaacatcaaaatgtaa 274
               ||||||||||||||||||||
Sbjct: 1695625 aaaagaacatcaaaatgtaa 1695644

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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463G11
          Length = 154188

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    gatgaaaagaacatcaaaat 270
              ||||||||||||||||||||
Sbjct: 116656 gatgaaaagaacatcaaaat 116637

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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gatgaaaagaacatcaaaat 270
             ||||||||||||||||||||
Sbjct: 63794 gatgaaaagaacatcaaaat 63775

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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     aaaagaacatcaaaatgtaa 274
               ||||||||||||||||||||
Sbjct: 1238090 aaaagaacatcaaaatgtaa 1238109

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>gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene, complete cds
          Length = 2757

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 gatgaaaagaacatcaaaat 270
           ||||||||||||||||||||
Sbjct: 664 gatgaaaagaacatcaaaat 645

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>emb|BX247867.7| Zebrafish DNA sequence from clone CH211-268D5 in linkage group 24,
             complete sequence
          Length = 146928

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    taaaatattaccattacaaa 117
             ||||||||||||||||||||
Sbjct: 68466 taaaatattaccattacaaa 68447

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>gb|AC004191.1|AC004191 Homo sapiens clone UWGC:y18c296 from 6p21, complete sequence
          Length = 45601

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aaaagaacatcaaaatgtaa 274
             ||||||||||||||||||||
Sbjct: 21938 aaaagaacatcaaaatgtaa 21957

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>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete
              sequence
          Length = 173053

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     taaaatattaccattacaaa 117
              ||||||||||||||||||||
Sbjct: 165786 taaaatattaccattacaaa 165767

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>dbj|AB023053.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
            clone:53L9, complete sequence
          Length = 14868

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  aaaagaacatcaaaatgtaa 274
            ||||||||||||||||||||
Sbjct: 3910 aaaagaacatcaaaatgtaa 3929


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,616,181
Number of Sequences: 3902068
Number of extensions: 4616181
Number of successful extensions: 104505
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104302
Number of HSP's gapped (non-prelim): 193
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result