ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast08g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR6_MOUSE (P25446) Tumor necrosis factor receptor superfamily m... 30 1.6
2TECTA_CHICK (Q9YH85) Alpha-tectorin precursor 30 1.6
3PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior... 28 6.1
4CHEA_ENTAE (P21813) Chemotaxis protein cheA (EC 2.7.13.3) (Fragm... 28 8.0
5LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN... 28 8.0
6Y218_BARHE (Q6G4W4) UPF0090 protein BH02180 28 8.0

>TNR6_MOUSE (P25446) Tumor necrosis factor receptor superfamily member 6|
           precursor (FASLG receptor) (Apoptosis-mediating surface
           antigen FAS) (Apo-1 antigen) (CD95 antigen)
          Length = 327

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 139 PTTEGKEYSTPNNPA--IRRCILCSE 210
           P TEGKEY   N+ A   RRC LC E
Sbjct: 80  PCTEGKEYMDKNHYADKCRRCTLCDE 105



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>TECTA_CHICK (Q9YH85) Alpha-tectorin precursor|
          Length = 2120

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 33  CTSRSTSRYCTIIQATIRSSTGLGTTHLWSKG 128
           C++R T R C  IQ T+R   GLG    W  G
Sbjct: 537 CSARRTHRLCQAIQVTLRCCQGLGIR--WENG 566



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>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 119 EQGLIMTLQQKGRNTVHLIIQPSGDAS 199
           E+  + T +Q+G +T HLI  PS D S
Sbjct: 346 EEAALATPEQRGDDTEHLIFSPSDDMS 372



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>CHEA_ENTAE (P21813) Chemotaxis protein cheA (EC 2.7.13.3) (Fragment)|
          Length = 226

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 80  YKV*HWAGHNTSLEQGLIMTLQQKGRNTVHLIIQPSG 190
           Y+V   AG  T   QG+++ LQ  GR    L+ Q  G
Sbjct: 138 YRVFECAGAKTEATQGIVVILQSAGRRNALLVDQLIG 174



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>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 849

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +2

Query: 11  SSKRTITVYQQIDQPLLHNHTGNYKV*HWAGHNTSLEQGLIMTLQQKGRNTVHLIIQP 184
           SS R++ V+ ++ + L +  +    +       +S    L+M L  +G++  HL+I P
Sbjct: 369 SSNRSVLVFDELSEELEYKVSAKRSMKALYDKMSSNNTALVMPLFGQGKSVTHLLISP 426



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>Y218_BARHE (Q6G4W4) UPF0090 protein BH02180|
          Length = 216

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 44  IDQPLLHNHTGNYKV*HWAGHNTSLEQGLIMTLQQKGRNTVHLIIQPSGDASSAPKALHG 223
           ID+PL+          HW GH   +E  +I+  ++K R T+  I Q  G   +  KA +G
Sbjct: 107 IDRPLVRKSD----FFHWQGHIAKIETKIILEGRRKFRGTLTNITQ-DGFTLNTDKAAYG 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,744,768
Number of Sequences: 219361
Number of extensions: 880534
Number of successful extensions: 2224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2224
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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