>MURE_NITEU (Q82VS8) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 521

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 111 HPPSCVLVVLLFLHSTLPGFASSKQIRKNQAGVL 10
           H P  +  VL  L  TL G    K+IRKNQA ++
Sbjct: 367 HTPDALNEVLTGLRETLAGTRIKKRIRKNQAKLI 400

>MATK_VIGMU (Q6PSB9) Maturase K (Intron maturase)|
          Length = 504

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 215 KLAYLDRLHTI-LQYLIITELLQVGFGLVVVADVFFIHLLVCWLYYYSFIPHYQALLPAN 39
           KL YL+    I + Y I  E+L V      + DV F HL+  + YYYS   ++ +L P  
Sbjct: 137 KLIYLNHKSDIRIPYPIHLEIL-VQILRYSIKDVSFFHLIRLFFYYYS---NWNSLFPPK 192

Query: 38  K 36
           K
Sbjct: 193 K 193

>TRME_CHLTR (O84704) Probable tRNA modification GTPase trmE|
          Length = 444

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 12  EPLPDFSLFVCWKQSLVMWNEGIIIQPTHKKVDEEYI 122
           +PLP+F   +  K ++++WN+  I+ P   +V  + I
Sbjct: 307 QPLPEFPTILYQKPTILLWNKCDIVSPPQIEVPFQQI 343


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,819,615
Number of Sequences: 219361
Number of extensions: 497973
Number of successful extensions: 1333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)