ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast08f04 |
|---|---|
| Clone Library Name | barley_pub |
>SPRL_STAES (Q8CRQ3) Protein sprT-like| Length = 151 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +3 Query: 105 GRLKISSYRLQMNSTPVELWSQMSYILLIRHSDAHYSL 218 GR +SS+ +++N E++ + + I +I+H HY L Sbjct: 37 GRYILSSHNIEINPKQYEMFGEKAVIDIIKHELCHYFL 74
>SPRL_STAEQ (Q5HMF3) Protein sprT-like| Length = 151 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +3 Query: 105 GRLKISSYRLQMNSTPVELWSQMSYILLIRHSDAHYSL 218 GR +SS+ +++N E++ + + I +I+H HY L Sbjct: 37 GRYILSSHNIEINPKQYEMFGEKAVIDIIKHELCHYFL 74
>DPO3A_STRPY (P0C0F2) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1034 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 87 ELHYLLGRLKISSYRLQMNSTPVELWSQMSYILLIRH 197 E +YL GR+K +RLQM V++ Y LL+ + Sbjct: 940 EFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVEN 976
>DPO3A_STRP8 (Q8P0S5) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1036 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 87 ELHYLLGRLKISSYRLQMNSTPVELWSQMSYILLIRH 197 E +YL GR+K +RLQM V++ Y LL+ + Sbjct: 942 EFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVEN 978
>DPO3A_STRP6 (Q5XBV1) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1036 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 87 ELHYLLGRLKISSYRLQMNSTPVELWSQMSYILLIRH 197 E +YL GR+K +RLQM V++ Y LL+ + Sbjct: 942 EFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVEN 978
>DPO3A_STRP3 (Q8K7A1) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1036 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 87 ELHYLLGRLKISSYRLQMNSTPVELWSQMSYILLIRH 197 E +YL GR+K +RLQM V++ Y LL+ + Sbjct: 942 EFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVEN 978
>DPO3A_STRP1 (P0C0F3) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1036 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 87 ELHYLLGRLKISSYRLQMNSTPVELWSQMSYILLIRH 197 E +YL GR+K +RLQM V++ Y LL+ + Sbjct: 942 EFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVEN 978
>HIS7_GLOVI (Q7NMJ6) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)| (IGPD) Length = 197 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -2 Query: 281 INQSLLALHLTDWAGIGTH 225 +N S + LHL WAGI +H Sbjct: 144 VNNSSMTLHLRQWAGINSH 162
>BRCA2_FELCA (Q864S8) Breast cancer type 2 susceptibility protein homolog (Fanconi| anemia group D1 protein homolog) Length = 3372 Score = 28.5 bits (62), Expect = 4.2 Identities = 23/80 (28%), Positives = 38/80 (47%) Frame = +2 Query: 68 VLLHVRRITLSPWEVENFLVSTANEQHPRGVVVSNVVHITHPPLRRSLLIKLYVCQCQPN 247 +L H R + E LVS + RGV+VS + PP++R+LL N Sbjct: 2188 LLSHARHFLPTCQHSEETLVSNSRRGKRRGVLVS----VGEPPIKRNLL----------N 2233 Query: 248 QSDAMLKDSD*FRCIHAKKS 307 + D ++K+ + + + A KS Sbjct: 2234 EFDRIIKNQE--KSLKASKS 2251
>ZW10_DROGR (O44219) Centromere/kinetochore protein zw10 (Mitotic 15 protein)| Length = 714 Score = 28.1 bits (61), Expect = 5.5 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = +2 Query: 107 EVENFLVSTANEQHPRGVVVSNVVHITHPPLRRSLLIKLYVCQCQPNQSDAMLKDSD*FR 286 E+ + L + NE G+ V + + L R L KL+ + S+ +LK D F+ Sbjct: 74 EISDLLATVGNE----GLSVLSDASVELAALSRDLREKLFGLRV----SEHILKLDDLFQ 125 Query: 287 CIHAKKSQALCLAML 331 C+ KS CL +L Sbjct: 126 CVEEAKSTKDCLVVL 140
>AOC2_HUMAN (O75106) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 756 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +2 Query: 113 ENFLVSTANEQHPRGVVVSNVVHITHPPLRRSLLIKLYVCQCQPNQSDAML 265 +N + S + P+ ++++ + PP R +L I L+ Q QPN S+ ++ Sbjct: 89 DNCIFSVELQLPPKAAALAHLDRGSPPPAREALAIVLFGGQPQPNVSELVV 139
>DVA1_DICVI (Q24702) DVA-1 polyprotein precursor (Antigen 1) (Allergen 1)| (Nematode polyprotein allergen DVA-1) (NPA DVA-1) [Contains: DVA-1 unit A; DVA-1 unit B; DVA-1 unit C; DVA-1 unit D; DVA-1 unit E; DVA-1 unit F; DVA-1 unit G; DVA-1 unit H; DVA-1 un Length = 1557 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 65 HVLLHVRRITLSPWEVENFLVSTANEQHPRGV 160 H + HVR + L WEV+N N+QH + + Sbjct: 525 HTIEHVREVCLGLWEVQN-----TNKQHKQSL 551
>SPRL_BACCR (Q81IT2) Protein sprT-like| Length = 152 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 105 GRLKISSYRLQMNSTPVELWSQMSYILLIRHSDAHYSL 218 GR + S+ +++N EL+ + + +I+H HY L Sbjct: 37 GRYLLKSHNIELNYRYYELYGEEELVGIIKHELCHYHL 74
>PROH_BACSU (P14383) Pyrroline-5-carboxylate reductase 1 (EC 1.5.1.2) (P5CR 1)| (P5C reductase 1) Length = 297 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +2 Query: 89 ITLSPWEVENFLVSTANEQHPRGVVVSNVVHITHPPLRRSLLIKLYVCQCQPNQS 253 + + P + EN L S + P +++S + IT + +SLL + V + PN S Sbjct: 84 LAMKPKDAENALSSLKSRIQPHQLILSVLAGITTSFIEQSLLNEQPVVRVMPNTS 138
>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)| (T-cad) Length = 712 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 11/61 (18%) Frame = +2 Query: 125 VSTANEQHPRGVVVSNVVHITH-----------PPLRRSLLIKLYVCQCQPNQSDAMLKD 271 ++ N H + V++ N+ + PPL + +KL VC C+ ++ D D Sbjct: 634 INKLNNTHAQVVLLQNLKKANYNIPISVTDSGKPPLTNNTELKLQVCSCKKSRMDCSASD 693 Query: 272 S 274 + Sbjct: 694 A 694
>AOC3_PONPY (Q5R9I0) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 762 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +2 Query: 113 ENFLVSTANEQHPRGVVVSNVVHITHPPLRRSLLIKLYVCQCQPNQSDAML 265 +N + S + P+ ++++ + PP R +L I L+ Q QPN S+ ++ Sbjct: 92 DNCIFSVELQLPPKAAALAHLDRGSPPPAREALAIILFGRQPQPNVSELVV 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,029,524 Number of Sequences: 219361 Number of extensions: 944617 Number of successful extensions: 2009 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2009 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
