ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast08f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_308323.2| Anopheles gambiae str. PEST ENSANGP00000010736 ... 44 0.24
2gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park ... 42 0.95
3gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complet... 42 0.95
4gb|AC163280.2| Mus musculus BAC clone RP23-478G5 from chromosome... 40 3.7
5gb|AC154276.2| Mus musculus BAC clone RP24-260F19 from chromosom... 40 3.7
6gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, com... 40 3.7
7gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, com... 40 3.7
8ref|XM_369647.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 3.7
9gb|AC164300.3| Mus musculus BAC clone RP23-310J6 from chromosome... 40 3.7
10gb|AC079804.5| Homo sapiens BAC clone RP11-740N7 from 7, complet... 40 3.7
11emb|AL356421.10| Human DNA sequence from clone RP11-550C4 on chr... 40 3.7
12gb|AC087342.6| Homo sapiens chromosome 8, clone RP11-540E4, comp... 40 3.7
13emb|AL035408.5|HS55I10 Human DNA sequence from clone CTA-55I10 o... 40 3.7
14emb|AL023280.1|HS455H14 Human DNA sequence from clone RP3-455H14... 40 3.7
15gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cance... 40 3.7
16gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, comp... 40 3.7
17gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 40 3.7
18gb|AC106847.3| Homo sapiens chromosome 8, clone CTD-2333A6, comp... 40 3.7
19gb|AC061975.6| Homo sapiens chromosome 17, clone CTD-2008P7, com... 40 3.7
20gb|AC092766.4| Homo sapiens chromosome 8, clone RP11-483N3, comp... 40 3.7
21gb|AC068020.7| Homo sapiens chromosome 8, clone RP11-556O5, comp... 40 3.7
22gb|AF499232.1| Homo sapiens endogenous retrovirus HCML-ARV, comp... 40 3.7
23gb|AY208746.1| Human endogenous retrovirus HCML-ARV, complete ge... 40 3.7
24gb|AC145875.3| Pan troglodytes BAC clone RP43-6O8 from chromosom... 40 3.7
25gb|AC004924.2| Homo sapiens PAC clone RP5-903G2 from 11, complet... 40 3.7
26gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complet... 40 3.7
27gb|AC008554.8| Homo sapiens chromosome 19 clone CTC-513N18, comp... 40 3.7
28gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, com... 40 3.7
29gb|AC127526.11| Homo sapiens chromosome 11, clone RP13-726E6, co... 40 3.7
30gb|AC130352.6| Homo sapiens chromosome 8, clone RP11-419I17, com... 40 3.7
31gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, com... 40 3.7
32gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332... 40 3.7
33dbj|AP003716.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.7
34gb|AF026253.1|AF026253 Gorilla gorilla DNA containing endogenous... 40 3.7
35gb|AF026252.1|AF026252 Homo sapiens DNA containing human endogen... 40 3.7
36gb|AF026251.1|AF026251 Homo sapiens DNA containing human endogen... 40 3.7
37gb|AF026250.1|AF026250 Homo sapiens DNA containing human endogen... 40 3.7
38gb|AF026248.1|AF026248 Homo sapiens DNA containing human endogen... 40 3.7
39gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, comple... 40 3.7
40gb|AC002094.1|AC002094 Genomic sequence from Human 17, complete ... 40 3.7
41dbj|AB062274.1| Homo sapiens gene for repeat sequence 40 3.7
42dbj|AP003498.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.7 
>ref|XM_308323.2| Anopheles gambiae str. PEST ENSANGP00000010736
           (ENSANGG00000008247), partial mRNA
          Length = 435

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 74  cacacacacactttttcgggga 95
           ||||||||||||||||||||||
Sbjct: 187 cacacacacactttttcgggga 166
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>gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park PAC library) complete
             sequence
          Length = 148600

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    acacgggcacacacacacttt 87
             |||||||||||||||||||||
Sbjct: 15492 acacgggcacacacacacttt 15472
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>gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complete sequence
          Length = 199358

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    tacacaaagctagcagctctc 175
              |||||||||||||||||||||
Sbjct: 151579 tacacaaagctagcagctctc 151599
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>gb|AC163280.2| Mus musculus BAC clone RP23-478G5 from chromosome 14, complete sequence
          Length = 202761

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    cacacacacactttttcggggaag 97
             |||||||||||||||| |||||||
Sbjct: 59062 cacacacacactttttgggggaag 59039
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>gb|AC154276.2| Mus musculus BAC clone RP24-260F19 from chromosome 14, complete
             sequence
          Length = 186529

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    cacacacacactttttcggggaag 97
             |||||||||||||||| |||||||
Sbjct: 83042 cacacacacactttttgggggaag 83065
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>gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, complete sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    acacgggcacacacacactttttc 90
             ||||| ||||||||||||||||||
Sbjct: 69536 acacgcgcacacacacactttttc 69559
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>gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, complete sequence
          Length = 151556

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    acacgggcacacacacactttttc 90
             ||||| ||||||||||||||||||
Sbjct: 47244 acacgcgcacacacacactttttc 47267
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>ref|XM_369647.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG05817.4) partial mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 acacaaagctagcagctctc 175
           ||||||||||||||||||||
Sbjct: 285 acacaaagctagcagctctc 266
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>gb|AC164300.3| Mus musculus BAC clone RP23-310J6 from chromosome 8, complete sequence
          Length = 200605

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    acacgggcacacacacactt 86
             ||||||||||||||||||||
Sbjct: 86720 acacgggcacacacacactt 86739
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>gb|AC079804.5| Homo sapiens BAC clone RP11-740N7 from 7, complete sequence
          Length = 184512

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 114113 gggcacacacacactttttc 114132
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>emb|AL356421.10| Human DNA sequence from clone RP11-550C4 on chromosome 6 Contains the
             3' end of the CD2AP gene for CD2-associated protein, the
             GPR111 gene for G protein-coupled receptor 111, the GPR115
             gene for G protein-coupled receptor 115, the 5' end of a
             gene for novel protein similar to seven transmembrane
             receptor (Rhodopsin family), a novel gene and a ribosomal
             protein 27A (RPL27A) pseudogene, complete sequence
          Length = 170532

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    acgggcacacacacactttt 88
             ||||||||||||||||||||
Sbjct: 17021 acgggcacacacacactttt 17002
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>gb|AC087342.6| Homo sapiens chromosome 8, clone RP11-540E4, complete sequence
          Length = 151023

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 112324 gggcacacacacactttttc 112343
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>emb|AL035408.5|HS55I10 Human DNA sequence from clone CTA-55I10 on chromosome 1q32.2-41
            Contains the 3' end of a novel gene and a novel gene,
            complete sequence
          Length = 90429

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  agctagcagctctcaaggac 181
            ||||||||||||||||||||
Sbjct: 5436 agctagcagctctcaaggac 5417
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>emb|AL023280.1|HS455H14 Human DNA sequence from clone RP3-455H14 on chromosome Xq21.3-22.3
              Contains a 5'-nucleotidase (cytosolic II-like 1) (NT5C2L1)
              pseudogene, complete sequence
          Length = 159387

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 104549 gggcacacacacactttttc 104568
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>gb|AC130888.2| Homo sapiens 3 BAC RP11-77P16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114687

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 42300 gggcacacacacactttttc 42319
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>gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, complete sequence
          Length = 158209

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1294 gggcacacacacactttttc 1275
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>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 86641 gggcacacacacactttttc 86660
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>gb|AC106847.3| Homo sapiens chromosome 8, clone CTD-2333A6, complete sequence
          Length = 135431

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 123880 gggcacacacacactttttc 123861
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>gb|AC061975.6| Homo sapiens chromosome 17, clone CTD-2008P7, complete sequence
          Length = 142163

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 79774 gggcacacacacactttttc 79755
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>gb|AC092766.4| Homo sapiens chromosome 8, clone RP11-483N3, complete sequence
          Length = 155847

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 120603 gggcacacacacactttttc 120584
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>gb|AC068020.7| Homo sapiens chromosome 8, clone RP11-556O5, complete sequence
          Length = 203411

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 58625 gggcacacacacactttttc 58606
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>gb|AF499232.1| Homo sapiens endogenous retrovirus HCML-ARV, complete sequence
          Length = 8824

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  gggcacacacacactttttc 90
           ||||||||||||||||||||
Sbjct: 969 gggcacacacacactttttc 950
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>gb|AY208746.1| Human endogenous retrovirus HCML-ARV, complete genome
          Length = 8412

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  gggcacacacacactttttc 90
           ||||||||||||||||||||
Sbjct: 589 gggcacacacacactttttc 570
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>gb|AC145875.3| Pan troglodytes BAC clone RP43-6O8 from chromosome 7, complete sequence
          Length = 179919

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 66171 gggcacacacacactttttc 66190
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>gb|AC004924.2| Homo sapiens PAC clone RP5-903G2 from 11, complete sequence
          Length = 92171

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 82486 gggcacacacacactttttc 82467
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>gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complete sequence
          Length = 168880

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 10210 gggcacacacacactttttc 10191
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>gb|AC008554.8| Homo sapiens chromosome 19 clone CTC-513N18, complete sequence
          Length = 166873

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 127011 gggcacacacacactttttc 127030
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>gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, complete sequence
          Length = 167015

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 103235 gggcacacacacactttttc 103216
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>gb|AC127526.11| Homo sapiens chromosome 11, clone RP13-726E6, complete sequence
          Length = 163733

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 60900 gggcacacacacactttttc 60919
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>gb|AC130352.6| Homo sapiens chromosome 8, clone RP11-419I17, complete sequence
          Length = 177211

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 119263 gggcacacacacactttttc 119282
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>gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, complete sequence
          Length = 195488

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 42672 gggcacacacacactttttc 42653
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>gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332E11, complete sequence
          Length = 179393

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 145557 gggcacacacacactttttc 145538
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>dbj|AP003716.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-119D9, complete
             sequence
          Length = 165187

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 95540 gggcacacacacactttttc 95559
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>gb|AF026253.1|AF026253 Gorilla gorilla DNA containing endogenous retrovirus H pol and
            endogenous retrovirus E gag regions
          Length = 1298

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1172 gggcacacacacactttttc 1153
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>gb|AF026252.1|AF026252 Homo sapiens DNA containing human endogenous retrovirus H pol and
            human endogenous retrovirus E gag regions
          Length = 1296

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1170 gggcacacacacactttttc 1151
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>gb|AF026251.1|AF026251 Homo sapiens DNA containing human endogenous retrovirus H pol and
            human endogenous retrovirus E gag regions
          Length = 1296

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1170 gggcacacacacactttttc 1151
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>gb|AF026250.1|AF026250 Homo sapiens DNA containing human endogenous retrovirus H pol and
            human endogenous retrovirus E gag regions
          Length = 1296

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1170 gggcacacacacactttttc 1151
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>gb|AF026248.1|AF026248 Homo sapiens DNA containing human endogenous retrovirus H pro/pol and
            human endogenous retrovirus E gag regions
          Length = 2825

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1654 gggcacacacacactttttc 1635
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>gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, complete sequence
          Length = 206312

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    acacgggcacacacacactt 86
             ||||||||||||||||||||
Sbjct: 43095 acacgggcacacacacactt 43076
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>gb|AC002094.1|AC002094 Genomic sequence from Human 17, complete sequence
          Length = 167101

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gggcacacacacactttttc 90
              ||||||||||||||||||||
Sbjct: 162721 gggcacacacacactttttc 162702
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>dbj|AB062274.1| Homo sapiens gene for repeat sequence
          Length = 11356

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   gggcacacacacactttttc 90
            ||||||||||||||||||||
Sbjct: 1675 gggcacacacacactttttc 1656
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>dbj|AP003498.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-167J8, complete
             sequence
          Length = 120199

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gggcacacacacactttttc 90
             ||||||||||||||||||||
Sbjct: 89001 gggcacacacacactttttc 88982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,216,469
Number of Sequences: 3902068
Number of extensions: 11216469
Number of successful extensions: 55548
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55495
Number of HSP's gapped (non-prelim): 53
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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