ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast08e05 |
|---|---|
| Clone Library Name | barley_pub |
>END8_ECOLI (P50465) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 32.7 bits (73), Expect = 0.24 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 56 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNAD 181 RV + + Q + T+ L+ +SD+ ++ P HPFL R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_ECOL6 (Q8FJU5) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 32.7 bits (73), Expect = 0.24 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 56 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNAD 181 RV + + Q + T+ L+ +SD+ ++ P HPFL R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_ECO57 (Q8X9C6) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 32.7 bits (73), Expect = 0.24 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 56 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNAD 181 RV + + Q + T+ L+ +SD+ ++ P HPFL R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>Y4EF_RHISN (P55429) Putative integrase/recombinase y4eF| Length = 251 Score = 32.3 bits (72), Expect = 0.31 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = +2 Query: 41 DNAGHRVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPF---LPRSNADSIARQHTQTP 211 D AGH + +Y + V+ H S L V PHSL+H F L + AD +T Sbjct: 152 DRAGHPITRYA--VGQACVKPHDLSRLSKPVTPHSLRHAFVVHLLEAGAD------VRTI 203 Query: 212 LPHIAHGFIWTQQHY 256 P + H + T HY Sbjct: 204 QPLLGHRSLATTAHY 218
>END8_SHIFL (Q83LZ7) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 31.6 bits (70), Expect = 0.54 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 56 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNAD 181 RV + + Q + T+ L+ +SD+ ++ P HPFL R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPD 128
>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)| Length = 182 Score = 30.4 bits (67), Expect = 1.2 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -2 Query: 252 CCCVQIKPCAMCGNGVCVCCLAIESA 175 CCCV C+ CG G C C +S+ Sbjct: 146 CCCVPACSCSSCGKGGCGSCGCSQSS 171 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -2 Query: 252 CCCVQIKPCAMCGNGVCVCC 193 CCCV C+ CG G C C Sbjct: 91 CCCVPACSCSSCGKGGCGSC 110 Score = 28.1 bits (61), Expect = 5.9 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = -2 Query: 252 CCCVQIKPCAMCGNGVC 202 CCCV C+ CG G C Sbjct: 39 CCCVPACSCSSCGKGGC 55
>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein| 5.1) (Ultrahigh sulfur keratin-associated protein 5.1) Length = 278 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Frame = -2 Query: 252 CCCVQIKPCAMCGNGVCVCCLAIESAL--LRGRKGCWREWGG 133 CCCV C+ CG G C C + A G KG GG Sbjct: 141 CCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSCGG 182
>END8_SALTY (Q8ZQU6) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +2 Query: 56 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNAD 181 R+ + R Q + T+ L+ +SD+ ++ HPFL R D Sbjct: 87 RILRVRLQTADKTILLYSASDIEMLTAEQLTTHPFLQRVGPD 128
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 27.3 bits (59), Expect(2) = 1.5 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Frame = +2 Query: 107 QSSDLRIMVP-PHSLQHPFLPRSNADSIARQHTQTPLPH 220 Q SD+ I P PH HP P HT TP PH Sbjct: 13 QYSDIYIHTPHPHPHPHPHTPTHT-----HPHTPTPTPH 46 Score = 21.6 bits (44), Expect(2) = 1.5 Identities = 7/10 (70%), Positives = 7/10 (70%) Frame = +3 Query: 207 HHCHTSHTVL 236 HH HT HT L Sbjct: 63 HHTHTPHTTL 72
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -2 Query: 252 CCCVQIKPCAMCGNGVCVCC 193 CCCV C+ CG G C C Sbjct: 77 CCCVPACSCSSCGKGGCGSC 96
>MNB_DROME (P49657) Serine/threonine-protein kinase minibrain (EC 2.7.12.1)| Length = 908 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +2 Query: 26 GGRKIDNAGHRVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRS 172 GGR++D GH V+ Y ++++ + + + P ++LQH F R+ Sbjct: 440 GGRRLDEPGHSVSDY-LKFKDLILRMLDFDPKTRVTPYYALQHNFFKRT 487
>END8_SALTI (Q8Z8D2) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = +2 Query: 56 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNAD 181 R+ + R Q + + L+ +SD+ ++ + HPFL R D Sbjct: 87 RILRVRLQTADKIILLYSASDIEMLTAEQLMTHPFLQRVGPD 128
>DUSC_SHEON (Q8EFG7) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 315 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/59 (22%), Positives = 29/59 (49%) Frame = +2 Query: 71 RSQYQENTVELHQSSDLRIMVPPHSLQHPFLPRSNADSIARQHTQTPLPHIAHGFIWTQ 247 +S + EN + ++++ + + S + P + + I + P+P IA+G IW + Sbjct: 147 KSLFMENALAVYEAGATELAIHARSKVDGYKPPAYWEYITEVRERLPIPVIANGEIWNR 205
>PELI3_MOUSE (Q8BXR6) Protein pellino homolog 3 (Pellino-3)| Length = 445 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 95 VELHQSSDLRIMVPPHSLQHPFLPRSN--ADSIARQHTQTPLPHIAHGF 235 V L + + + P H F P + ++ AR QTPLPH H F Sbjct: 370 VPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAF 418
>PELI3_HUMAN (Q8N2H9) Protein pellino homolog 3 (Pellino-3)| Length = 469 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 95 VELHQSSDLRIMVPPHSLQHPFLPRSN--ADSIARQHTQTPLPHIAHGF 235 V L + + + P H F P + ++ AR QTPLPH H F Sbjct: 394 VPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAF 442
>PHAR1_XENLA (Q6GLU8) Phosphatase and actin regulator 1| Length = 586 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +2 Query: 125 IMVPPHSLQHPFLPRSNADSIARQHTQTPLPHIAHGFIWTQQHYS 259 I +P P+ P SN S HT P AH + QH+S Sbjct: 265 ICMPLGGTDFPYGPYSNQKSSQHHHTVLPSQLAAHQLQYGSQHFS 309
>VE5_RHPV1 (P24834) Probable protein E5| Length = 157 Score = 27.7 bits (60), Expect = 7.7 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -2 Query: 252 CCCVQIKPCAMCGNGVCVCC 193 CCC KP C +C CC Sbjct: 29 CCCYACKPPPFCCFWLCFCC 48
>HEVE_HEVBR (P02877) Pro-hevein precursor (Major hevein) [Contains: Hevein| (Allergen Hev b 6); Win-like protein] Length = 204 Score = 27.7 bits (60), Expect = 7.7 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -1 Query: 247 LCPNKTVCDVWQWC 206 LCPN C W WC Sbjct: 28 LCPNNLCCSQWGWC 41
>KUP_ERWCT (Q6DB92) Low affinity potassium transport system protein kup (Kup| system potassium uptake protein) Length = 622 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 135 GTMILRSEL*CNSTVFSWYWDLYCA 61 GTM++ S L C V +W W+ Y A Sbjct: 373 GTMVITSILFCTVAVKNWLWNRYLA 397 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,802,844 Number of Sequences: 219361 Number of extensions: 614717 Number of successful extensions: 2142 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2142 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
