ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast08a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_511841.1| PREDICTED: Pan troglodytes similar to recoverin... 42 0.49
2ref|NM_002903.2| Homo sapiens recoverin (RCV1), mRNA 42 0.49
3gb|BC001720.1| Homo sapiens recoverin, mRNA (cDNA clone MGC:1649... 42 0.49
4gb|BT009838.1| Homo sapiens recoverin mRNA, complete cds 42 0.49
5gb|S62028.1| recoverin [human, retina, mRNA, 1108 nt] 42 0.49
6gb|S45545.1| cancer-associated retinopathy antigen [human, mRNA,... 42 0.49
7gb|S43855.1| recoverin=photoreceptor protein [human, retina, mRN... 42 0.49
8gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, co... 42 0.49
9gb|AY889431.1| Synthetic construct Homo sapiens clone FLH109935.... 42 0.49
10gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.15... 42 0.49
11dbj|AB001838.1| Homo sapiens mRNA for recoverin, complete cds 42 0.49
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.6
13emb|BX037074.1|CNS090RQ Single read from an extremity of a full-... 38 7.6
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.6
15gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 38 7.6
16ref|XM_343319.2| PREDICTED: Rattus norvegicus YY1 associated fac... 38 7.6
17emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-8... 38 7.6
18gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 7.6
19gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 38 7.6
20gb|AC127360.3| Mus musculus BAC clone RP23-125F9 from 15, comple... 38 7.6
21dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 38 7.6

>ref|XM_511841.1| PREDICTED: Pan troglodytes similar to recoverin (LOC455078), mRNA
          Length = 1087

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 686 aaaacacgccggaaaagcgagccga 710



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>ref|NM_002903.2| Homo sapiens recoverin (RCV1), mRNA
          Length = 1217

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 621 aaaacacgccggaaaagcgagccga 645



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>gb|BC001720.1| Homo sapiens recoverin, mRNA (cDNA clone MGC:1649 IMAGE:3354566),
           complete cds
          Length = 1101

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 505 aaaacacgccggaaaagcgagccga 529



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>gb|BT009838.1| Homo sapiens recoverin mRNA, complete cds
          Length = 603

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 434 aaaacacgccggaaaagcgagccga 458



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>gb|S62028.1| recoverin [human, retina, mRNA, 1108 nt]
          Length = 1108

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 518 aaaacacgccggaaaagcgagccga 542



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>gb|S45545.1| cancer-associated retinopathy antigen [human, mRNA, 1101 nt]
          Length = 1101

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 521 aaaacacgccggaaaagcgagccga 545



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>gb|S43855.1| recoverin=photoreceptor protein [human, retina, mRNA, 1190 nt]
          Length = 1190

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 621 aaaacacgccggaaaagcgagccga 645



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>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence
          Length = 153472

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    aaaacacgccggaaaggcgagccga 95
             ||||||||||||||| |||||||||
Sbjct: 68932 aaaacacgccggaaaagcgagccga 68956



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>gb|AY889431.1| Synthetic construct Homo sapiens clone FLH109935.01X recoverin
           (RCV1) mRNA, complete cds
          Length = 603

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 434 aaaacacgccggaaaagcgagccga 458



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>gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.150_K_15, complete sequence
          Length = 166701

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 71    aaaacacgccggaaaggcgagccga 95
             ||||||||||||||| |||||||||
Sbjct: 16342 aaaacacgccggaaaagcgagccga 16318



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>dbj|AB001838.1| Homo sapiens mRNA for recoverin, complete cds
          Length = 603

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  aaaacacgccggaaaggcgagccga 95
           ||||||||||||||| |||||||||
Sbjct: 434 aaaacacgccggaaaagcgagccga 458



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 74       acacgccggaaaggcgagc 92
                |||||||||||||||||||
Sbjct: 32554817 acacgccggaaaggcgagc 32554835



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>emb|BX037074.1|CNS090RQ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA9BE08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 402

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 124 gcgcgcctttccgccggcc 142
           |||||||||||||||||||
Sbjct: 79  gcgcgcctttccgccggcc 97



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 74       acacgccggaaaggcgagc 92
                |||||||||||||||||||
Sbjct: 32645327 acacgccggaaaggcgagc 32645345



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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    acacgccggaaaggcgagc 92
             |||||||||||||||||||
Sbjct: 88266 acacgccggaaaggcgagc 88284



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>ref|XM_343319.2| PREDICTED: Rattus norvegicus YY1 associated factor 2 (predicted)
           (Yaf2_predicted), mRNA
          Length = 1446

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 135 cgccggccaaccagcggcc 153
           |||||||||||||||||||
Sbjct: 414 cgccggccaaccagcggcc 396



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>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201587

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 25    aaaccctagcacctactagcagt 47
             ||||||||| |||||||||||||
Sbjct: 97213 aaaccctagtacctactagcagt 97235



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 132     ttccgccggccaaccagcg 150
               |||||||||||||||||||
Sbjct: 2764794 ttccgccggccaaccagcg 2764812



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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 107     agcggcgggcattgccagcgcgccttt 133
               ||||||||| ||| |||||||||||||
Sbjct: 4934042 agcggcgggaattcccagcgcgccttt 4934068



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>gb|AC127360.3| Mus musculus BAC clone RP23-125F9 from 15, complete sequence
          Length = 192315

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 135    cgccggccaaccagcggcc 153
              |||||||||||||||||||
Sbjct: 148064 cgccggccaaccagcggcc 148082



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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 107     agcggcgggcattgccagcgcgccttt 133
               ||||||||| ||| |||||||||||||
Sbjct: 4865278 agcggcgggaattcccagcgcgccttt 4865304


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 626,906
Number of Sequences: 3902068
Number of extensions: 626906
Number of successful extensions: 37921
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37734
Number of HSP's gapped (non-prelim): 187
length of query: 158
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 136
effective length of database: 17,147,199,772
effective search space: 2332019168992
effective search space used: 2332019168992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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