| Clone Name | rbast08a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_511841.1| PREDICTED: Pan troglodytes similar to recoverin (LOC455078), mRNA Length = 1087 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 686 aaaacacgccggaaaagcgagccga 710
>ref|NM_002903.2| Homo sapiens recoverin (RCV1), mRNA Length = 1217 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 621 aaaacacgccggaaaagcgagccga 645
>gb|BC001720.1| Homo sapiens recoverin, mRNA (cDNA clone MGC:1649 IMAGE:3354566), complete cds Length = 1101 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 505 aaaacacgccggaaaagcgagccga 529
>gb|BT009838.1| Homo sapiens recoverin mRNA, complete cds Length = 603 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 434 aaaacacgccggaaaagcgagccga 458
>gb|S62028.1| recoverin [human, retina, mRNA, 1108 nt] Length = 1108 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 518 aaaacacgccggaaaagcgagccga 542
>gb|S45545.1| cancer-associated retinopathy antigen [human, mRNA, 1101 nt] Length = 1101 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 521 aaaacacgccggaaaagcgagccga 545
>gb|S43855.1| recoverin=photoreceptor protein [human, retina, mRNA, 1190 nt] Length = 1190 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 621 aaaacacgccggaaaagcgagccga 645
>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence Length = 153472 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 68932 aaaacacgccggaaaagcgagccga 68956
>gb|AY889431.1| Synthetic construct Homo sapiens clone FLH109935.01X recoverin (RCV1) mRNA, complete cds Length = 603 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 434 aaaacacgccggaaaagcgagccga 458
>gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.150_K_15, complete sequence Length = 166701 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 16342 aaaacacgccggaaaagcgagccga 16318
>dbj|AB001838.1| Homo sapiens mRNA for recoverin, complete cds Length = 603 Score = 42.1 bits (21), Expect = 0.49 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaacacgccggaaaggcgagccga 95 ||||||||||||||| ||||||||| Sbjct: 434 aaaacacgccggaaaagcgagccga 458
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 acacgccggaaaggcgagc 92 ||||||||||||||||||| Sbjct: 32554817 acacgccggaaaggcgagc 32554835
>emb|BX037074.1|CNS090RQ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA9BE08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 402 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 gcgcgcctttccgccggcc 142 ||||||||||||||||||| Sbjct: 79 gcgcgcctttccgccggcc 97
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 acacgccggaaaggcgagc 92 ||||||||||||||||||| Sbjct: 32645327 acacgccggaaaggcgagc 32645345
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 acacgccggaaaggcgagc 92 ||||||||||||||||||| Sbjct: 88266 acacgccggaaaggcgagc 88284
>ref|XM_343319.2| PREDICTED: Rattus norvegicus YY1 associated factor 2 (predicted) (Yaf2_predicted), mRNA Length = 1446 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 cgccggccaaccagcggcc 153 ||||||||||||||||||| Sbjct: 414 cgccggccaaccagcggcc 396
>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201587 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 25 aaaccctagcacctactagcagt 47 ||||||||| ||||||||||||| Sbjct: 97213 aaaccctagtacctactagcagt 97235
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ttccgccggccaaccagcg 150 ||||||||||||||||||| Sbjct: 2764794 ttccgccggccaaccagcg 2764812
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 38.2 bits (19), Expect = 7.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 107 agcggcgggcattgccagcgcgccttt 133 ||||||||| ||| ||||||||||||| Sbjct: 4934042 agcggcgggaattcccagcgcgccttt 4934068
>gb|AC127360.3| Mus musculus BAC clone RP23-125F9 from 15, complete sequence Length = 192315 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 cgccggccaaccagcggcc 153 ||||||||||||||||||| Sbjct: 148064 cgccggccaaccagcggcc 148082
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 38.2 bits (19), Expect = 7.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 107 agcggcgggcattgccagcgcgccttt 133 ||||||||| ||| ||||||||||||| Sbjct: 4865278 agcggcgggaattcccagcgcgccttt 4865304 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 626,906 Number of Sequences: 3902068 Number of extensions: 626906 Number of successful extensions: 37921 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37734 Number of HSP's gapped (non-prelim): 187 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)