| Clone Name | rbast07g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY662492.1| Hordeum vulgare subsp. vulgare non-specific lipid transfer protein 6 (Ltp6) gene, promoter and complete cds Length = 3257 Score = 458 bits (231), Expect = e-126 Identities = 231/231 (100%) Strand = Plus / Minus Query: 7 aaaggaccatcttatatttcgcttgtaagcatgcattacagagttccgacaaagtacacg 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3257 aaaggaccatcttatatttcgcttgtaagcatgcattacagagttccgacaaagtacacg 3198 Query: 67 agttccctcgggagtacaagatcacagctctcgtggcaacaacggccacaacgtacgaac 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3197 agttccctcgggagtacaagatcacagctctcgtggcaacaacggccacaacgtacgaac 3138 Query: 127 gaagctgcggcggcagcagcagtaaaactaatttattatgagaaagcggtagaactagta 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3137 gaagctgcggcggcagcagcagtaaaactaatttattatgagaaagcggtagaactagta 3078 Query: 187 aagcagtaaactaaacgcggtggagccatgcatgcatccagtactgctaga 237 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3077 aagcagtaaactaaacgcggtggagccatgcatgcatccagtactgctaga 3027 Score = 65.9 bits (33), Expect = 7e-08 Identities = 33/33 (100%) Strand = Plus / Minus Query: 253 acgcatacagtactgctagctatagctagcaag 285 ||||||||||||||||||||||||||||||||| Sbjct: 3011 acgcatacagtactgctagctatagctagcaag 2979
>gb|AY057932.1| Bromus inermis nonspecific lipid transfer protein (BG14) mRNA, complete cds Length = 841 Score = 56.0 bits (28), Expect = 6e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 32 taagcatgcattacagagttccgacaaagtac 63 ||||||||||||||||||||||||| |||||| Sbjct: 739 taagcatgcattacagagttccgacgaagtac 708 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Minus Query: 175 gtagaactagtaaagcagtaaactaaacgcggtggagccatgcatgcatcca 226 ||||||||||||||||||||| | ||| ||||||| ||||||||||||| Sbjct: 593 gtagaactagtaaagcagtaattaatacgacgtggagctatgcatgcatcca 542 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tcacagctctcgtggcaaca 107 |||||||||||||||||||| Sbjct: 677 tcacagctctcgtggcaaca 658
>emb|X57477.1|OCCCBI2 Rabbit mRNA for calcium channel BI-2 Length = 8405 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 gaagctgcggcggcagcagcag 148 |||||||||||||||||||||| Sbjct: 1424 gaagctgcggcggcagcagcag 1445
>emb|X57476.1|OCCCBI1 Rabbit mRNA for calcium channel BI-1 Length = 8820 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 gaagctgcggcggcagcagcag 148 |||||||||||||||||||||| Sbjct: 1424 gaagctgcggcggcagcagcag 1445
>emb|X57689.1|OCCCBI2CB Rabbit mRNA for calcium channel BI-2 (lambda CBP109 and CB101) Length = 8405 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 gaagctgcggcggcagcagcag 148 |||||||||||||||||||||| Sbjct: 1424 gaagctgcggcggcagcagcag 1445
>emb|X57688.1|OCCCBI1CB Rabbit mRNA for calcium channel BI-1 (lambda CBP109 and CB101) Length = 8820 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 gaagctgcggcggcagcagcag 148 |||||||||||||||||||||| Sbjct: 1424 gaagctgcggcggcagcagcag 1445
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aagctgcggcggcagcagca 147 |||||||||||||||||||| Sbjct: 1583046 aagctgcggcggcagcagca 1583027
>gb|AC096672.14| Trypanosoma brucei chromosome 4 clone RPCI93-24M18, complete sequence Length = 158627 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aagctgcggcggcagcagca 147 |||||||||||||||||||| Sbjct: 151241 aagctgcggcggcagcagca 151222
>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence Length = 162238 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 132069 agctgcggcggcagcagcag 132050 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 85039 agctgcggcggcagcagcag 85020
>ref|XM_588833.2| PREDICTED: Bos taurus similar to CG2186-PA (LOC511489), mRNA Length = 3255 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 2684 agctgcggcggcagcagcag 2703
>gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, complete sequence Length = 215599 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 161604 agctgcggcggcagcagcag 161623 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 114575 agctgcggcggcagcagcag 114594 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 74245 agctgcggcggcagcagcag 74264 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 13941 agctgcggcggcagcagcag 13960
>ref|XM_976324.1| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 gene (5530401N06Rik), mRNA Length = 992 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 361 agctgcggcggcagcagcag 342
>ref|XM_975832.1| PREDICTED: Mus musculus RIKEN cDNA A030005L19 gene (A030005L19Rik), mRNA Length = 806 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 301 agctgcggcggcagcagcag 282
>ref|XM_919110.2| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 gene (5530401N06Rik), mRNA Length = 992 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 361 agctgcggcggcagcagcag 342
>ref|XM_919025.2| PREDICTED: Mus musculus RIKEN cDNA A030005L19 gene (A030005L19Rik), mRNA Length = 806 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 301 agctgcggcggcagcagcag 282
>ref|XM_896507.2| PREDICTED: Mus musculus RIKEN cDNA 5530401N06 gene (5530401N06Rik), mRNA Length = 992 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 361 agctgcggcggcagcagcag 342
>ref|XM_896385.2| PREDICTED: Mus musculus RIKEN cDNA A030005L19 gene (A030005L19Rik), mRNA Length = 806 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 301 agctgcggcggcagcagcag 282
>emb|AL022018.1|DMC8D8 Drosophila melanogaster cosmid clone 8D8 Length = 38397 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 18644 agctgcggcggcagcagcag 18625
>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181360 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 15035 agctgcggcggcagcagcag 15016
>ref|NM_078977.2| Drosophila melanogaster toutatis CG10897-RA, transcript variant A (tou), mRNA Length = 10497 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 1014 agctgcggcggcagcagcag 1033
>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164252 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 74550 agctgcggcggcagcagcag 74531
>gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, complete cds Length = 39574 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 26639 agctgcggcggcagcagcag 26658
>gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like element transposase gene, partial cds; and fibroin gene, complete cds Length = 9921 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 9063 agctgcggcggcagcagcag 9082 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 7845 agctgcggcggcagcagcag 7864
>dbj|AK020696.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030005L19 product:unclassifiable, full insert sequence Length = 808 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 302 agctgcggcggcagcagcag 283
>gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, region 48A-48C, BAC clone BACR35F01, complete sequence Length = 170869 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 7046 agctgcggcggcagcagcag 7027
>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone BACR38D12, complete sequence Length = 171831 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 47365 agctgcggcggcagcagcag 47346
>dbj|AK119747.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-D09, full insert sequence Length = 3450 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 921 agctgcggcggcagcagcag 940
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete sequence Length = 261690 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 125538 agctgcggcggcagcagcag 125519
>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete sequence Length = 308311 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 185870 agctgcggcggcagcagcag 185851
>gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, complete sequence Length = 169201 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 60006 agctgcggcggcagcagcag 59987
>dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rieske Fe-S precursor protein, complete cds Length = 1436 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agctgcggcggcagcagcag 148 |||||||||||||||||||| Sbjct: 821 agctgcggcggcagcagcag 840 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,050,020 Number of Sequences: 3902068 Number of extensions: 2050020 Number of successful extensions: 46573 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46478 Number of HSP's gapped (non-prelim): 94 length of query: 285 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 263 effective length of database: 17,147,199,772 effective search space: 4509713540036 effective search space used: 4509713540036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)