ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast07d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIN1_HUMAN (Q13671) Ras and Rab interactor 1 (Ras interaction/in... 28 5.5
2NBEA_CAEEL (Q19317) Putative neurobeachin homolog 28 7.2

>RIN1_HUMAN (Q13671) Ras and Rab interactor 1 (Ras interaction/interference|
           protein 1) (Ras inhibitor JC99)
          Length = 783

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 24  FMFYRGFDWPDMTGSGTDILGNGQAKNQNR 113
           ++ YR  +WP+  G+ T+  G+GQ++ ++R
Sbjct: 698 YLVYRRAEWPETQGAVTEEEGSGQSEARSR 727



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>NBEA_CAEEL (Q19317) Putative neurobeachin homolog|
          Length = 2507

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 102  FLLVHFQVCPSQILSCQANQTLD 34
            F+L+H Q   S ++SCQ NQ +D
Sbjct: 2020 FVLMHRQALESDLVSCQLNQWID 2042


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,410,515
Number of Sequences: 219361
Number of extensions: 212689
Number of successful extensions: 974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 80,573,946
effective HSP length: 13
effective length of database: 77,722,253
effective search space used: 1865334072
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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