>ref|XM_517231.1| PREDICTED: Pan troglodytes similar to alpha-fetoprotein precursor
            (LOC461258), mRNA
          Length = 1830

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1583 atgacaagttcattttcca 1601

>gb|M38272.1|GORAFPA Gorilla gorilla alpha-fetoprotein (gafp) gene, complete cds
          Length = 26833

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    atgacaagttcattttcca 45
             |||||||||||||||||||
Sbjct: 18737 atgacaagttcattttcca 18755

>ref|XM_452274.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C01760g predicted mRNA
          Length = 912

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 28  tgacaagttcattttccac 46
           |||||||||||||||||||
Sbjct: 184 tgacaagttcattttccac 166

>ref|XM_749096.1| Aspergillus fumigatus Af293 DNA-directed RNA polymerase III largest
            subunit (Afu3g14370) partial mRNA
          Length = 4362

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   agttcattttccacgcaat 51
            |||||||||||||||||||
Sbjct: 2582 agttcattttccacgcaat 2600

>gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 224930

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     aaaacatgacaagttcatt 40
              |||||||||||||||||||
Sbjct: 183268 aaaacatgacaagttcatt 183250

>emb|V01514.1|HSFETO Human mRNA encoding alpha-fetoprotein (AFP). AFP is a major serum
            protein (MG: 70000) synthesized during fetal life
          Length = 2029

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1627 atgacaagttcattttcca 1645

>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     tgacaagttcattttccac 46
              |||||||||||||||||||
Sbjct: 140070 tgacaagttcattttccac 140052

>emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              15/17
          Length = 349107

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      ctgggaagtcggaactcgc 19
              |||||||||||||||||||
Sbjct: 330345 ctgggaagtcggaactcgc 330363

>gb|AC026745.8| Homo sapiens chromosome 5 clone RP11-245L6, complete sequence
          Length = 128963

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    gtttcttatctaagcacta 93
             |||||||||||||||||||
Sbjct: 69763 gtttcttatctaagcacta 69745

>emb|CR625429.1| full-length cDNA clone CS0DM008YE05 of Fetal liver of Homo sapiens
            (human)
          Length = 1954

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1609 atgacaagttcattttcca 1627

>emb|CR625428.1| full-length cDNA clone CS0DM008YE06 of Fetal liver of Homo sapiens
            (human)
          Length = 1740

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1351 atgacaagttcattttcca 1369

>emb|CR621004.1| full-length cDNA clone CS0DM005YG13 of Fetal liver of Homo sapiens
           (human)
          Length = 1117

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  atgacaagttcattttcca 45
           |||||||||||||||||||
Sbjct: 741 atgacaagttcattttcca 759

>emb|CR618771.1| full-length cDNA clone CS0DM003YF04 of Fetal liver of Homo sapiens
            (human)
          Length = 1973

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1603 atgacaagttcattttcca 1621

>emb|CR616557.1| full-length cDNA clone CS0DJ003YP05 of T cells (Jurkat cell line) Cot
            10-normalized of Homo sapiens (human)
          Length = 1914

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1599 atgacaagttcattttcca 1617

>emb|CR610573.1| full-length cDNA clone CS0DM002YJ13 of Fetal liver of Homo sapiens
            (human)
          Length = 1956

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1601 atgacaagttcattttcca 1619

>emb|CR608871.1| full-length cDNA clone CS0DM008YH16 of Fetal liver of Homo sapiens
            (human)
          Length = 1976

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1599 atgacaagttcattttcca 1617

>emb|CR608054.1| full-length cDNA clone CS0DJ003YO13 of T cells (Jurkat cell line) Cot
            10-normalized of Homo sapiens (human)
          Length = 1914

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1599 atgacaagttcattttcca 1617

>emb|CR602918.1| full-length cDNA clone CS0DM013YE02 of Fetal liver of Homo sapiens
           (human)
          Length = 1325

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  atgacaagttcattttcca 45
           |||||||||||||||||||
Sbjct: 970 atgacaagttcattttcca 988

>emb|CR603328.1| full-length cDNA clone CS0DM011YM14 of Fetal liver of Homo sapiens
            (human)
          Length = 2002

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1609 atgacaagttcattttcca 1627

>gb|AC108157.3| Homo sapiens BAC clone RP11-580P21 from 4, complete sequence
          Length = 167001

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     atgacaagttcattttcca 45
              |||||||||||||||||||
Sbjct: 118403 atgacaagttcattttcca 118421

>gb|AC097518.2| Homo sapiens BAC clone RP11-487E13 from 4, complete sequence
          Length = 189323

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tgacaagttcattttccac 46
              |||||||||||||||||||
Sbjct: 152481 tgacaagttcattttccac 152499

>gb|AC008250.23| Homo sapiens 12 BAC RP11-729I10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 141132

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    attttccacgcaatatgct 56
             |||||||||||||||||||
Sbjct: 89046 attttccacgcaatatgct 89064

>ref|NM_001134.1| Homo sapiens alpha-fetoprotein (AFP), mRNA
          Length = 2032

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1630 atgacaagttcattttcca 1648

>gb|U21916.1|PTU21916 Pan troglodytes alpha-fetoprotein precursor (AFP) gene, complete cds
          Length = 26874

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    atgacaagttcattttcca 45
             |||||||||||||||||||
Sbjct: 18784 atgacaagttcattttcca 18802

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 25       acatgacaagttcattttc 43
                |||||||||||||||||||
Sbjct: 24607339 acatgacaagttcattttc 24607357

>dbj|AB158630.1| Macaca fascicularis AFP mRNA for alpha-fetoprotein, partial cds
          Length = 316

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  atgacaagttcattttcca 45
           |||||||||||||||||||
Sbjct: 180 atgacaagttcattttcca 198

>gb|BC027881.1| Homo sapiens alpha-fetoprotein, mRNA (cDNA clone MGC:34639
            IMAGE:5208299), complete cds
          Length = 2098

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   atgacaagttcattttcca 45
            |||||||||||||||||||
Sbjct: 1613 atgacaagttcattttcca 1631

>emb|CR846099.7| Zebrafish DNA sequence from clone DKEY-182M23 in linkage group 12,
            complete sequence
          Length = 140422

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 110  caagggcacaacacaaagc 128
            |||||||||||||||||||
Sbjct: 2445 caagggcacaacacaaagc 2463

>dbj|AP002456.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-956A8, complete
              sequence
          Length = 114109

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 24     aacatgacaagttcattttccac 46
              ||||||||||||||| |||||||
Sbjct: 108618 aacatgacaagttcactttccac 108596

>dbj|AP001929.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640N11, complete
             sequence
          Length = 161547

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 24    aacatgacaagttcattttccac 46
             ||||||||||||||| |||||||
Sbjct: 45442 aacatgacaagttcactttccac 45420

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 25       acatgacaagttcattttc 43
                |||||||||||||||||||
Sbjct: 24535545 acatgacaagttcattttc 24535563

>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 143895

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    acatgacaagttcattttc 43
             |||||||||||||||||||
Sbjct: 52205 acatgacaagttcattttc 52223

>gb|M16110.1|HUMAFP Homo sapiens alpha-fetoprotein gene, complete cds
          Length = 27553

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    atgacaagttcattttcca 45
             |||||||||||||||||||
Sbjct: 19409 atgacaagttcattttcca 19427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 929,418
Number of Sequences: 3902068
Number of extensions: 929418
Number of successful extensions: 60490
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60418
Number of HSP's gapped (non-prelim): 72
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)