>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable|
           element R1DM (ORF 1)
          Length = 471

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 142 CIHSEHSSPRCKLLERITLQALLQGHLRRSCGPPWGLRHC 261
           C+  +H    C+  E +  Q   QGH    C  P   R+C
Sbjct: 402 CVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVDCRNC 441

>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460)
          Length = 4128

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -2

Query: 236  PQERRKCPCSS--ACKVILSSSLHRGLLCSE*MHQYQGQSQ*SFNLLFSNACLSSLF*SK 63
            P + R+C  S   +CK + S     GLL  E    + G  +   +LL + A LS+     
Sbjct: 1493 PGDERQCLPSLDLSCKQLAS-----GLL--ELAFAFGGLCERLVSLLLNPAVLSTASLGS 1545

Query: 62   EKGSVIHFSH 33
             +GSVIHFSH
Sbjct: 1546 SQGSVIHFSH 1555


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,864,835
Number of Sequences: 219361
Number of extensions: 690066
Number of successful extensions: 1406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)