ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast06h12 |
|---|---|
| Clone Library Name | barley_pub |
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 34.7 bits (78), Expect = 0.064 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAEED 170 ++++ + +TKA + GR FGG V A FY E KF++ + Sbjct: 337 VQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNE 376
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 32.7 bits (73), Expect = 0.24 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 182 LE+ V+ + KA ++GR FGG V A FY +KF Sbjct: 361 LEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 396
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 32.7 bits (73), Expect = 0.24 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 182 LE+ V+ + KA ++GR FGG V A FY +KF Sbjct: 357 LEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 392
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 194 +EYA+ S A+ + GR F G VVA FYP Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 194 +EYA+ S A+ + GR F G VVA FYP Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 194 +EYA+ S A+ + GR F G VVA FYP Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAEEDY 167 +E+A +A+ A+ GRKF VV +Y +K+ + Sbjct: 456 VEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAEEDYD 164 +E+A +A+ A+ GRKF VV +Y +K+ ++ Sbjct: 447 VEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQFN 488
>TILS_NEPOL (Q9T390) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 367 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +1 Query: 19 LSSNINNWRL--CINPGLQESSTRRGNVAVNRTNYTKHYWH 135 L + N W+L C +P Q+ RR + Y +H+W+ Sbjct: 213 LRNYANRWKLPLCYDPSNQDQRIRRNRIRHELLPYLRHWWN 253
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.5 bits (62), Expect = 4.6 Identities = 19/79 (24%), Positives = 29/79 (36%) Frame = +1 Query: 49 CINPGLQESSTRRGNVAVNRTNYTKHYWHWKREIIMLPHHSPLQQTCSRGRRPQQLGFHQ 228 C++ L T + A + W + +M PH +Q+ R RPQ F Sbjct: 1794 CVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKIIMRALRPQ---FLV 1850 Query: 229 ISFHASPSLLWWSHQHLHT 285 + H P + W H T Sbjct: 1851 AAGHTEPEVDAWWQAHYTT 1869
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.5 bits (62), Expect = 4.6 Identities = 19/79 (24%), Positives = 29/79 (36%) Frame = +1 Query: 49 CINPGLQESSTRRGNVAVNRTNYTKHYWHWKREIIMLPHHSPLQQTCSRGRRPQQLGFHQ 228 C++ L T + A + W + +M PH +Q+ R RPQ F Sbjct: 1794 CVDAALGPRDTEDCHAAQGKAGLEIRAWAKEWVQVMSPHFRAIQKIIMRALRPQ---FLV 1850 Query: 229 ISFHASPSLLWWSHQHLHT 285 + H P + W H T Sbjct: 1851 AAGHTEPEVDAWWQAHYTT 1869
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 182 +++ + D + KA T +H R FGG + A PE + Sbjct: 559 VKFENADFAEKAITGLHQRWFGGRTIKASILPETDY 594
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -1 Query: 289 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAEED 170 +E++ + + K A+ GR FGG VVA Y + F + D Sbjct: 595 VEFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGD 634
>V_NIPAV (Q997F2) Nonstructural protein V| Length = 456 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%) Frame = -3 Query: 242 AWKEIWWKPSCCGL--LPREQVC*RGL*CGSIIISLFQC 132 AW E W P+C + LPR Q C CG F C Sbjct: 421 AWVEEWCNPACSRITPLPRRQEC----QCGECPTECFHC 455
>ACBD6_BRARE (Q4V8X4) Acyl-CoA-binding domain-containing protein 6| Length = 300 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -1 Query: 277 DVDGSTKAKTAMHGRK---FGGNPVVAVFYPENKFAEED 170 D +GS K+ G K FGG P V+ Y E K EED Sbjct: 140 DPEGSQKSSERRGGEKRTGFGG-PAVSSLYQEEKIREED 177
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Frame = +1 Query: 124 HYWHWKREIIMLPHHSPLQQTCSRGRRPQQLGFH-----QISFHASPSLLWWSHQHLH 282 H+ H +++ HH QQ ++ QQ FH Q FH P H H H Sbjct: 225 HHHHQQQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHPQQKQQFHDHHH 282 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,494,334 Number of Sequences: 219361 Number of extensions: 753383 Number of successful extensions: 1935 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1935 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
