ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast06h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRN... 446 e-122
2gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome... 129 5e-27
3gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 129 5e-27
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 129 5e-27
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 129 5e-27
6dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
7gb|AY111048.1| Zea mays CL3975_1 mRNA sequence 76 7e-11
8gb|AY103558.1| Zea mays PCO134114 mRNA sequence 76 7e-11
9gb|AY112521.1| Zea mays CL1839_9 mRNA sequence 72 1e-09
10emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRN... 60 4e-06
11emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRN... 60 4e-06
12gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb044... 60 4e-06
13gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, com... 60 4e-06
14gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence 52 0.001
15gb|AC174607.1| Lycopersicon esculentum, complete sequence 52 0.001
16gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mR... 48 0.016
17gb|AC091851.2| Homo sapiens chromosome 5 clone CTD-2258D22, comp... 44 0.24
18gb|AC010368.4|AC010368 Homo sapiens chromosome 5 clone CTD-2046J... 44 0.24
19emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 ... 44 0.24
20ref|XM_843187.1| PREDICTED: Canis familiaris hypothetical protei... 42 0.96
21gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, com... 42 0.96
22emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 42 0.96
23dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 42 0.96
24gb|AC027136.7| Staphylococcus aureus clone sabac-106, complete s... 42 0.96
25gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 42 0.96
26gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 42 0.96
27gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 42 0.96
28dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 42 0.96
29dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 42 0.96
30gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, c... 42 0.96
31emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 42 0.96
32gb|BC077314.1| Xenopus laevis ornithine aminotransferase (gyrate... 40 3.8
33gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 3.8
34emb|CR974476.4| Mouse DNA sequence from clone RP24-469J5 on chro... 40 3.8
35gb|BC045249.1| Xenopus laevis ornithine aminotransferase, mRNA (... 40 3.8
36gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, compl... 40 3.8
37emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 3.8
38emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 3.8
39emb|CR788287.7| Mouse DNA sequence from clone RP23-362B9 on chro... 40 3.8
40emb|BX324204.32| Mouse DNA sequence from clone RP23-86F8 on chro... 40 3.8
41gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 3.8
42dbj|AK140724.1| Mus musculus adult male corpus striatum cDNA, RI... 40 3.8
43gb|AC091169.7| Homo sapiens chromosome 18, clone RP11-809A17, co... 40 3.8
44emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chr... 40 3.8
45emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chr... 40 3.8
46gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp... 40 3.8
47gb|AC023906.7|AC023906 Homo sapiens chromosome 15 clone CTD-2184... 40 3.8
48ref|NM_001028646.1| Caenorhabditis elegans Serpentine Receptor, ... 40 3.8
49ref|NM_001028647.1| Caenorhabditis elegans Serpentine Receptor, ... 40 3.8
50gb|BC040773.1| Mus musculus similar to LRRGT00085, mRNA (cDNA cl... 40 3.8
51gb|U53139.2| Caenorhabditis elegans cosmid F18E3, complete sequence 40 3.8
52emb|BX890623.6| Mouse DNA sequence from clone RP23-83O23 on chro... 40 3.8
53emb|BX813319.4| Mouse DNA sequence from clone RP23-54B12 on chro... 40 3.8
54gb|AY005479.1| Xenopus laevis ornithine aminotransferase (OAT) m... 40 3.8
55emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chr... 40 3.8
56emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on ch... 40 3.8
57emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chr... 40 3.8
58emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on ch... 40 3.8
59gb|AC118684.9| Mus musculus chromosome 17, clone RP23-414B17, co... 40 3.8
60emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on ch... 40 3.8
61emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chr... 40 3.8
62emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chr... 40 3.8
63gb|U16118.1|PSU16118 Pseudomonas syringae pv. tomato avrE avirul... 40 3.8
64emb|AL845456.11| Mouse DNA sequence from clone RP23-90C6 on chro... 40 3.8
65gb|U97505.1|PSU97505 Pseudomonas syringae avirulence protein (av... 40 3.8
66emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on ch... 40 3.8
67emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chro... 40 3.8
68emb|AL845491.3| Mouse DNA sequence from clone RP23-360A2 on chro... 40 3.8 
>gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRNA, complete cds
          Length = 1786

 Score =  446 bits (225), Expect = e-122
 Identities = 265/277 (95%), Gaps = 1/277 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   gcaatctatcttccaatattaataactggcggctctgcataaatccagggctacaagaaa 73
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1783 gcaatctatcttccaatattaataactggcggttctgcataaatccagggctacaagaaa 1724

                                                                        
Query: 74   gctcaactagaaggggaaacgttgctgtaaatcgaacgaactacacaaaacactattggc 133
            |||| |||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| |
Sbjct: 1723 gctcgactagaagggaaaacgttgctgtaaatcgaacaaactacagaaagcactattgtc 1664

                                                                        
Query: 134  attggaaaagagagataatt-atgctgccgcatcatagtcctcttcagcaaacttgttct 192
            |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct: 1663 attggaaaagagagataatttatgctgccgcgtcatagtcctcatcagcaaacttgttct 1604

                                                                        
Query: 193  cggggtagaagaccgcaacaactgggtttccaccaaatttccttccatgcatcgccgtct 252
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1603 cggggtagaagaccgcaacaactgggtttccaccgaatttccttccatgcatcgccgtct 1544

                                                 
Query: 253  ttgctttggtggagccatcaacatctgcatactctaa 289
            ||||||||||||| |||||||||||||||||||||||
Sbjct: 1543 ttgctttggtggaaccatcaacatctgcatactctaa 1507
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>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0064H09, complete sequence
          Length = 146742

 Score =  129 bits (65), Expect = 5e-27
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                         
Query: 182   aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 241
             |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 23869 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 23810

                                                          
Query: 242   catcgccgtctttgctttggtggagccatcaacatctgcatactc 286
             ||| ||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 23809 cattgccgtctttgctttggtggcgccgtccacatctgcatactc 23765
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>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score =  129 bits (65), Expect = 5e-27
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                          
Query: 182    aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 241
              |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 131487 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 131428

                                                           
Query: 242    catcgccgtctttgctttggtggagccatcaacatctgcatactc 286
              ||| ||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 131427 cattgccgtctttgctttggtggcgccgtccacatctgcatactc 131383
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  129 bits (65), Expect = 5e-27
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                            
Query: 182      aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 241
                |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 26720924 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 26720865

                                                             
Query: 242      catcgccgtctttgctttggtggagccatcaacatctgcatactc 286
                ||| ||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 26720864 cattgccgtctttgctttggtggcgccgtccacatctgcatactc 26720820
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  129 bits (65), Expect = 5e-27
 Identities = 95/105 (90%)
 Strand = Plus / Minus

                                                                            
Query: 182      aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 241
                |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 27046474 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 27046415

                                                             
Query: 242      catcgccgtctttgctttggtggagccatcaacatctgcatactc 286
                ||| ||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 27046414 cattgccgtctttgctttggtggcgccgtccacatctgcatactc 27046370
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>dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full
            insert sequence
          Length = 2841

 Score =  121 bits (61), Expect = 1e-24
 Identities = 94/105 (89%)
 Strand = Plus / Minus

                                                                        
Query: 182  aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 241
            |||||||||||| |||||||| || || |||||||| |||||||| || |||||||||||
Sbjct: 2706 aaacttgttctcagggtagaacactgcgacaactggatttccaccgaacttccttccatg 2647

                                                         
Query: 242  catcgccgtctttgctttggtggagccatcaacatctgcatactc 286
            ||| ||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 2646 cattgccgtctttgctttggtggcgccgtccacatctgcatactc 2602
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>gb|AY111048.1| Zea mays CL3975_1 mRNA sequence
          Length = 974

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 180 gcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcca 239
           |||||||||| ||| |  ||| |||| || || |||||||| ||||||||||||||||||
Sbjct: 659 gcaaacttgtcctccgcatagcagacagcgaccactgggttcccaccaaatttccttcca 600

                                 
Query: 240 tgcatcgccgtctttgctttgg 261
           |||| ||| |||||||||||||
Sbjct: 599 tgcagcgctgtctttgctttgg 578
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>gb|AY103558.1| Zea mays PCO134114 mRNA sequence
          Length = 1707

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 178  cagcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttc 237
            |||| ||||||| |||||| ||||| || || || ||  |||| || ||||||||||  |
Sbjct: 1348 cagcgaacttgtcctcgggatagaacacggccaccacctggttcccgccaaatttccgcc 1289

                                                          
Query: 238  catgcatcgccgtctttgctttggtggagccatcaacatctgcata 283
            |||||||| |||||||||||||||| ||||| || |||||||||||
Sbjct: 1288 catgcatccccgtctttgctttggtcgagccctcgacatctgcata 1243
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>gb|AY112521.1| Zea mays CL1839_9 mRNA sequence
          Length = 647

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 87/104 (83%)
 Strand = Plus / Plus

                                                                       
Query: 180 gcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcca 239
           |||||||||| ||| |||||||| ||||| || ||  |||| || || |||||||  |||
Sbjct: 391 gcaaacttgtcctcagggtagaacaccgccaccacctggttcccgccgaatttccgccca 450

                                                       
Query: 240 tgcatcgccgtctttgctttggtggagccatcaacatctgcata 283
           |||||| | |||||||||||||| ||||| || |||||||||||
Sbjct: 451 tgcatccctgtctttgctttggttgagccctccacatctgcata 494
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>emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large
            subunit 65a
          Length = 2108

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 183  aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 240
            ||||||||||| ||||||||||| || |||||| |||| ||||| ||||| |||||||
Sbjct: 1705 aacttgttctccgggtagaagacagctacaacttggttaccaccgaattttcttccat 1648



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 255  gctttggtggagccatcaacatctgcatactc 286
            |||||| |||| || |||||||||||||||||
Sbjct: 1633 gctttgctggaaccgtcaacatctgcatactc 1602
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>emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large
            subunit 65b
          Length = 2204

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 183  aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 240
            |||||||| || || |||||||| ||||||||| |||| ||||||||||| |||||||
Sbjct: 1835 aacttgttttctggatagaagacagcaacaacttggttgccaccaaattttcttccat 1778
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>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete
             sequence
          Length = 132549

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 217   ggtttccaccaaatttccttccatgcatcgccgtctttgctttggtggagccatcaacat 276
             |||| ||||||||||||   ||||||||| ||||||||||||||||  |||| || ||||
Sbjct: 75654 ggttcccaccaaatttctgcccatgcatctccgtctttgctttggtcaagccctcgacat 75713

                   
Query: 277   ctgcat 282
             ||||||
Sbjct: 75714 ctgcat 75719
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>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence
          Length = 105308

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 183   aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 240
             ||||||||||| || |||||||| |||| |||| |||| ||||||||||| |||||||
Sbjct: 67692 aacttgttctctggatagaagacagcaataacttggttaccaccaaattttcttccat 67635
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>gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence
          Length = 2047

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                        
Query: 163  catcatagtcctcttcagcaaacttgttctcggggtagaagaccgcaacaactgggtttc 222
            ||||||||||| |||||   |||||||| || || |||||||| || | |||| |||| |
Sbjct: 1858 catcatagtccccttcatagaacttgttttctggatagaagacagctataacttggttgc 1799

                              
Query: 223  caccaaatttccttccat 240
            |||||||||| |||||||
Sbjct: 1798 caccaaattttcttccat 1781
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>gb|AC174607.1| Lycopersicon esculentum, complete sequence
          Length = 115283

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                         
Query: 163   catcatagtcctcttcagcaaacttgttctcggggtagaagaccgcaacaactgggtttc 222
             ||||||||||| |||||   |||||||| || || |||||||| || | |||| |||| |
Sbjct: 93817 catcatagtccccttcatagaacttgttttctggatagaagacagctataacttggttgc 93758

                               
Query: 223   caccaaatttccttccat 240
             |||||||||| |||||||
Sbjct: 93757 caccaaattttcttccat 93740
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>gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mRNA, complete cds
          Length = 2240

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 175  cttcagcaaacttgttctcggggtagaa 202
            ||||||| ||||||||||||||||||||
Sbjct: 2062 cttcagcgaacttgttctcggggtagaa 2035
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>gb|AC091851.2| Homo sapiens chromosome 5 clone CTD-2258D22, complete sequence
          Length = 155606

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 267  ccatcaacatctgcatactcta 288
            ||||||||||||||||||||||
Sbjct: 2704 ccatcaacatctgcatactcta 2725
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>gb|AC010368.4|AC010368 Homo sapiens chromosome 5 clone CTD-2046J7, complete sequence
          Length = 149307

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 267  ccatcaacatctgcatactcta 288
            ||||||||||||||||||||||
Sbjct: 9805 ccatcaacatctgcatactcta 9784
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>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3,
             complete sequence
          Length = 117153

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                         
Query: 179   agcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcc 238
             |||||| |||||||| || || ||||| ||||  ||| | |||||||||||||| |||||
Sbjct: 86776 agcaaatttgttctctggataaaagacagcaattacttgatttccaccaaattttcttcc 86717

               
Query: 239   at 240
             ||
Sbjct: 86716 at 86715



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 255   gctttggtggagccatcaacatctgcatactc 286
             |||||||| || ||||||||||| ||||||||
Sbjct: 86700 gctttggtagaaccatcaacatcagcatactc 86669
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>ref|XM_843187.1| PREDICTED: Canis familiaris hypothetical protein LOC606782
           (LOC606782), mRNA
          Length = 1560

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 140 aaagagagataattatgctgc 160
           |||||||||||||||||||||
Sbjct: 888 aaagagagataattatgctgc 908
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>gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, complete sequence
          Length = 199472

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 127   tattggcattggaaaagagagataa 151
             |||||||||||||||||||| ||||
Sbjct: 51940 tattggcattggaaaagagacataa 51916
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2712038 tggaaaagagagataattatg 2712018
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2794213 tggaaaagagagataattatg 2794193
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>gb|AC027136.7| Staphylococcus aureus clone sabac-106, complete sequence
          Length = 49898

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   tggaaaagagagataattatg 156
             |||||||||||||||||||||
Sbjct: 30726 tggaaaagagagataattatg 30706
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2723348 tggaaaagagagataattatg 2723328
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2735172 tggaaaagagagataattatg 2735152
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2786610 tggaaaagagagataattatg 2786590
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2732698 tggaaaagagagataattatg 2732678
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2730499 tggaaaagagagataattatg 2730479
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>gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, complete sequence
          Length = 175623

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 127   tattggcattggaaaagagagataa 151
             |||||||||||||||||||| ||||
Sbjct: 82896 tattggcattggaaaagagacataa 82872
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     tggaaaagagagataattatg 156
               |||||||||||||||||||||
Sbjct: 2658785 tggaaaagagagataattatg 2658765
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>gb|BC077314.1| Xenopus laevis ornithine aminotransferase (gyrate atrophy), mRNA
            (cDNA clone MGC:80244 IMAGE:5048763), complete cds
          Length = 1903

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 233  ccttccatgcatcgccgtctttgctttg 260
            |||||||||| |||| ||||||||||||
Sbjct: 1246 ccttccatgcgtcgcagtctttgctttg 1219
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 245     cgccgtctttgctttggtgg 264
               ||||||||||||||||||||
Sbjct: 1518633 cgccgtctttgctttggtgg 1518652
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>emb|CR974476.4| Mouse DNA sequence from clone RP24-469J5 on chromosome 2, complete
              sequence
          Length = 138122

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 109448 actattggcattggaaaaga 109429
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>gb|BC045249.1| Xenopus laevis ornithine aminotransferase, mRNA (cDNA clone MGC:53882
            IMAGE:5543139), complete cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 233  ccttccatgcatcgccgtctttgctttg 260
            ||||||||||||| | ||||||||||||
Sbjct: 1235 ccttccatgcatcacagtctttgctttg 1208
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>gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, complete sequence
          Length = 184090

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atctatcttccaatattaat 36
             ||||||||||||||||||||
Sbjct: 46772 atctatcttccaatattaat 46791
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    ggagccatcaacatctgcat 282
              ||||||||||||||||||||
Sbjct: 570375 ggagccatcaacatctgcat 570356
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>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              2/17
          Length = 349287

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    acacaaaacactattggcat 135
              ||||||||||||||||||||
Sbjct: 127467 acacaaaacactattggcat 127486
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>emb|CR788287.7| Mouse DNA sequence from clone RP23-362B9 on chromosome 2, complete
             sequence
          Length = 98311

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 29442 actattggcattggaaaaga 29461
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>emb|BX324204.32| Mouse DNA sequence from clone RP23-86F8 on chromosome 2, complete
             sequence
          Length = 90051

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 86001 actattggcattggaaaaga 85982
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    cctcttcagcaaacttgttc 191
              ||||||||||||||||||||
Sbjct: 918472 cctcttcagcaaacttgttc 918491
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>dbj|AK140724.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
            enriched library, clone:C030019B04
            product:unclassifiable, full insert sequence
          Length = 2461

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  actattggcattggaaaaga 144
            ||||||||||||||||||||
Sbjct: 2303 actattggcattggaaaaga 2284
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>gb|AC091169.7| Homo sapiens chromosome 18, clone RP11-809A17, complete sequence
          Length = 163138

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    tcctcttcagcaaacttgtt 190
              ||||||||||||||||||||
Sbjct: 136797 tcctcttcagcaaacttgtt 136778
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>emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chromosome 2, complete
              sequence
          Length = 193326

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 168702 actattggcattggaaaaga 168721



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 68695 actattggcattggaaaaga 68714
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>emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chromosome 2, complete
              sequence
          Length = 145110

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 139720 actattggcattggaaaaga 139701



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  actattggcattggaaaaga 144
            ||||||||||||||||||||
Sbjct: 7207 actattggcattggaaaaga 7226
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>gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp pathogenicity island,
             complete sequence
          Length = 52498

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   cgccgtctttgctttggtgg 264
             ||||||||||||||||||||
Sbjct: 35331 cgccgtctttgctttggtgg 35312
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>gb|AC023906.7|AC023906 Homo sapiens chromosome 15 clone CTD-2184D3 map 15q21.2, complete
             sequence
          Length = 93287

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tatcttccaatattaataac 39
             ||||||||||||||||||||
Sbjct: 42280 tatcttccaatattaataac 42261
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>ref|NM_001028646.1| Caenorhabditis elegans Serpentine Receptor, class W family member
           (srw-68) (srw-68) mRNA, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 actgggtttccaccaaattt 232
           ||||||||||||||||||||
Sbjct: 580 actgggtttccaccaaattt 599
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>ref|NM_001028647.1| Caenorhabditis elegans Serpentine Receptor, class W family member
           (srw-68) (srw-68) mRNA, complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 actgggtttccaccaaattt 232
           ||||||||||||||||||||
Sbjct: 580 actgggtttccaccaaattt 599
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>gb|BC040773.1| Mus musculus similar to LRRGT00085, mRNA (cDNA clone IMAGE:4505796)
          Length = 4158

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  actattggcattggaaaaga 144
            ||||||||||||||||||||
Sbjct: 2242 actattggcattggaaaaga 2223
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>gb|U53139.2| Caenorhabditis elegans cosmid F18E3, complete sequence
          Length = 23138

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   actgggtttccaccaaattt 232
             ||||||||||||||||||||
Sbjct: 13856 actgggtttccaccaaattt 13837
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>emb|BX890623.6| Mouse DNA sequence from clone RP23-83O23 on chromosome 2, complete
             sequence
          Length = 226542

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 31401 actattggcattggaaaaga 31420
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>emb|BX813319.4| Mouse DNA sequence from clone RP23-54B12 on chromosome 2, complete
              sequence
          Length = 217197

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 101215 actattggcattggaaaaga 101196
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>gb|AY005479.1| Xenopus laevis ornithine aminotransferase (OAT) mRNA, complete cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 233  ccttccatgcatcgccgtctttgctttg 260
            ||||||||||||| | ||||||||||||
Sbjct: 1177 ccttccatgcatcacagtctttgctttg 1150
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>emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chromosome 2, complete
              sequence
          Length = 186050

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 121988 actattggcattggaaaaga 122007



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 24404 actattggcattggaaaaga 24423
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>emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on chromosome 2, complete
              sequence
          Length = 169581

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 161139 actattggcattggaaaaga 161120



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 71730 actattggcattggaaaaga 71711
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>emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chromosome 2, complete
            sequence
          Length = 115602

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  actattggcattggaaaaga 144
            ||||||||||||||||||||
Sbjct: 6045 actattggcattggaaaaga 6064
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>emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on chromosome 2, complete
              sequence
          Length = 218484

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 123098 actattggcattggaaaaga 123079
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>gb|AC118684.9| Mus musculus chromosome 17, clone RP23-414B17, complete sequence
          Length = 202561

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    ggaaaagagagataattatg 156
              ||||||||||||||||||||
Sbjct: 126981 ggaaaagagagataattatg 127000
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>emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on chromosome 2, complete
              sequence
          Length = 179228

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 129176 actattggcattggaaaaga 129157
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>emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chromosome 2, complete
             sequence
          Length = 188883

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 93766 actattggcattggaaaaga 93747
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>emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chromosome 2, complete
             sequence
          Length = 178000

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 46000 actattggcattggaaaaga 46019
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>gb|U16118.1|PSU16118 Pseudomonas syringae pv. tomato avrE avirulence locus,
            transcriptional units II and III, promoter region, and
            orf, partial cds
          Length = 2008

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  cgccgtctttgctttggtgg 264
            ||||||||||||||||||||
Sbjct: 1275 cgccgtctttgctttggtgg 1256
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>emb|AL845456.11| Mouse DNA sequence from clone RP23-90C6 on chromosome 2, complete
              sequence
          Length = 158544

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 152457 actattggcattggaaaaga 152438
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>gb|U97505.1|PSU97505 Pseudomonas syringae avirulence protein (avrE) and avirulence protein
            (avrF) genes, complete cds
          Length = 6130

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  cgccgtctttgctttggtgg 264
            ||||||||||||||||||||
Sbjct: 1153 cgccgtctttgctttggtgg 1134
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>emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on chromosome 2, complete
             sequence
          Length = 128936

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   actattggcattggaaaaga 144
             ||||||||||||||||||||
Sbjct: 36581 actattggcattggaaaaga 36600
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>emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chromosome 2, complete
              sequence
          Length = 216517

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 111884 actattggcattggaaaaga 111903
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>emb|AL845491.3| Mouse DNA sequence from clone RP23-360A2 on chromosome 2, complete
              sequence
          Length = 201381

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    actattggcattggaaaaga 144
              ||||||||||||||||||||
Sbjct: 142332 actattggcattggaaaaga 142351


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,700,721
Number of Sequences: 3902068
Number of extensions: 2700721
Number of successful extensions: 45233
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45053
Number of HSP's gapped (non-prelim): 179
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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