ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast06f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC125620.5| Rattus norvegicus 4 BAC CH230-9J2 (Children's Hos... 42 0.72
2gb|AC027655.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 0.72
3ref|NM_024260.3| Mus musculus RIKEN cDNA 1700034M03 gene (170003... 42 0.72
4gb|BC002304.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cD... 42 0.72
5gb|AY254697.1| Mus musculus Bcl2-like protein mRNA, complete cds 42 0.72
6dbj|AK134533.1| Mus musculus adult male medulla oblongata cDNA, ... 42 0.72
7dbj|AK006602.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 0.72
8dbj|AK042031.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 0.72
9dbj|AK075898.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 0.72
10gb|BC036294.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cD... 42 0.72
11gb|BC043092.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cD... 42 0.72
12gb|AC066688.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 0.72
13ref|XM_231428.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 0.72
14dbj|AK217072.1| Mus musculus cDNA, clone:Y2G0140I16, strand:minu... 42 0.72
15dbj|AK129458.1| Mus musculus mRNA for mKIAA1861 protein 42 0.72
16gb|BC091288.1| Rattus norvegicus similar to RIKEN cDNA 1700034M0... 42 0.72
17dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 0.72
18gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, co... 40 2.8
19emb|X60784.1|CGTUBB1 Cricetulus griseus (chinese hamster) mRNA f... 40 2.8 
>gb|AC125620.5| Rattus norvegicus 4 BAC CH230-9J2 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 122542

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   ttaggagaagcatctgttcat 121
             |||||||||||||||||||||
Sbjct: 20272 ttaggagaagcatctgttcat 20252
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>gb|AC027655.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-318M11, complete
              sequence
          Length = 104804

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    ttaggagaagcatctgttcat 121
              |||||||||||||||||||||
Sbjct: 100455 ttaggagaagcatctgttcat 100435
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>ref|NM_024260.3| Mus musculus RIKEN cDNA 1700034M03 gene (1700034M03Rik), mRNA
          Length = 3543

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2511 ttaggagaagcatctgttcat 2491
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>gb|BC002304.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:8233
            IMAGE:3591600), complete cds
          Length = 2124

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 1067 ttaggagaagcatctgttcat 1047
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>gb|AY254697.1| Mus musculus Bcl2-like protein mRNA, complete cds
          Length = 3539

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2515 ttaggagaagcatctgttcat 2495
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>dbj|AK134533.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330404O15 product:Bcl2-like
            protein homolog [Mus musculus], full insert sequence
          Length = 5256

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 4321 ttaggagaagcatctgttcat 4301
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>dbj|AK006602.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700034M03 product:RIKEN cDNA 1700034M03
           gene, full insert sequence
          Length = 1398

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 ttaggagaagcatctgttcat 121
           |||||||||||||||||||||
Sbjct: 748 ttaggagaagcatctgttcat 728
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>dbj|AK042031.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630053E16 product:hypothetical protein,
            full insert sequence
          Length = 3678

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2502 ttaggagaagcatctgttcat 2482
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>dbj|AK075898.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310043D14 product:hypothetical protein,
            full insert sequence
          Length = 3543

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2511 ttaggagaagcatctgttcat 2491
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>gb|BC036294.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:30584
            IMAGE:3500316), complete cds
          Length = 3516

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2462 ttaggagaagcatctgttcat 2442
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>gb|BC043092.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:58011
            IMAGE:6405356), complete cds
          Length = 4854

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2479 ttaggagaagcatctgttcat 2459
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>gb|AC066688.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-438J16, complete
            sequence
          Length = 176367

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 7973 ttaggagaagcatctgttcat 7953
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>ref|XM_231428.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700034M03 gene
            (predicted) (LOC312083), mRNA
          Length = 3541

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2511 ttaggagaagcatctgttcat 2491
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>dbj|AK217072.1| Mus musculus cDNA, clone:Y2G0140I16, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000050225, based on BLAT search
          Length = 413

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 ttaggagaagcatctgttcat 121
           |||||||||||||||||||||
Sbjct: 319 ttaggagaagcatctgttcat 299
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>dbj|AK129458.1| Mus musculus mRNA for mKIAA1861 protein
          Length = 3504

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 2472 ttaggagaagcatctgttcat 2452
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>gb|BC091288.1| Rattus norvegicus similar to RIKEN cDNA 1700034M03 gene, mRNA (cDNA
            clone IMAGE:7304986), partial cds
          Length = 2133

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttaggagaagcatctgttcat 121
            |||||||||||||||||||||
Sbjct: 1073 ttaggagaagcatctgttcat 1053
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 143     atggagcggagtggatcaagg 163
               |||||||||||||||||||||
Sbjct: 3028259 atggagcggagtggatcaagg 3028239
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>gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, complete sequence
          Length = 181948

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      aaagactgaaattattatac 25
              ||||||||||||||||||||
Sbjct: 135834 aaagactgaaattattatac 135815
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>emb|X60784.1|CGTUBB1 Cricetulus griseus (chinese hamster) mRNA for beta tubulin (clone
           B16T)
          Length = 1609

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 gaagccagcacaaatttatt 185
           ||||||||||||||||||||
Sbjct: 36  gaagccagcacaaatttatt 55


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,753,665
Number of Sequences: 3902068
Number of extensions: 1753665
Number of successful extensions: 114244
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114204
Number of HSP's gapped (non-prelim): 40
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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