ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast06e12 |
|---|---|
| Clone Library Name | barley_pub |
>TRPE_ARATH (P32068) Anthranilate synthase component I-1, chloroplast precursor| (EC 4.1.3.27) Length = 595 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = +3 Query: 42 NVMLQPSFLVNRKRYRSPSTGSCGASPVRIALHSHASDAYPPAAKAEECYSLNPKSS 212 NV + +R+ S ++ +S V + +S S AY P+ ++ +C S++P++S Sbjct: 6 NVATMQALTFSRRLLPSVASRYLSSSSVTVTGYSGRSSAYAPSFRSIKCVSVSPEAS 62
>BMAL1_RAT (Q9EPW1) Aryl hydrocarbon receptor nuclear translocator-like| protein 1 (Brain and muscle ARNT-like 1) (Tic) Length = 626 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = +3 Query: 81 RYRSPSTGSCGASPVRIALHSHASDAYPPAAKAEECYSLNPKSSNIPSVSFIPYATQ 251 R R S SCG+SP+ I + DA P K LN + +IPS +P Q Sbjct: 508 RIRGSSPSSCGSSPLNIT-STPPPDASSPGGKK----ILNGGTPDIPSAGLLPGQAQ 559
>BMAL1_MESAU (O88529) Aryl hydrocarbon receptor nuclear translocator-like| protein 1 (Brain and muscle ARNT-like 1) Length = 626 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = +3 Query: 81 RYRSPSTGSCGASPVRIALHSHASDAYPPAAKAEECYSLNPKSSNIPSVSFIPYATQ 251 R R S SCG+SP+ I + DA P K LN + +IPS +P Q Sbjct: 508 RIRGSSPSSCGSSPLNIT-STPPPDASSPGGKK----ILNGGTPDIPSTGLLPGQAQ 559
>BMAL1_MOUSE (Q9WTL8) Aryl hydrocarbon receptor nuclear translocator-like| protein 1 (Brain and muscle ARNT-like 1) (Arnt3) Length = 632 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = +3 Query: 81 RYRSPSTGSCGASPVRIALHSHASDAYPPAAKAEECYSLNPKSSNIPSVSFIPYATQ 251 R R S SCG+SP+ I + DA P K LN + +IPS +P Q Sbjct: 514 RIRGSSPSSCGSSPLNIT-STPPPDASSPGGKK----ILNGGTPDIPSTGLLPGQAQ 565
>LCMT1_EMENI (Q5AQJ2) Leucine carboxyl methyltransferase 1 (EC 2.1.1.-) (Protein| phosphatase methyltransferase 1) Length = 382 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -2 Query: 274 WHMMQEHYCVAYGINDTEGIFDDFG 200 W ++ +HYCVA+G D F +G Sbjct: 349 WKLLAQHYCVAWGWRDGSTRFTGWG 373
>RFX1_YEAST (P48743) RFX-like DNA-binding protein RFX1| Length = 811 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Frame = +3 Query: 87 RSPSTGSCGASPVRIALHSHASDAYPPAAKAEECYSLNP-----KSSNIPSV 227 R P+T S P I+L+ S AYP + K+EE + NP +++ PS+ Sbjct: 154 RQPATYS--VYPASISLNRSNSSAYPLSFKSEETLNNNPPTAAKRTNTFPSI 203
>KCND1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D member 1| (Voltage-gated potassium channel subunit Kv4.1) Length = 647 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -3 Query: 198 SRNSTPPL*QQAGRHQKHANARRFELE-KPHRNLYLDCDT 82 SR S L AG + HA R L KPH +L L+CD+ Sbjct: 552 SRGSMQELDMLAGLRRSHAPQSRSSLNAKPHDSLDLNCDS 591
>NU1M_CITLA (P08834) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 316 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 99 YLDCDTFFGLQGMMAVT*HCTPSVKSTY 16 + DCD F G ++ C PSVKS Y Sbjct: 34 FFDCDFFCGFGQVIEAKERCFPSVKSRY 61
>POF1_SCHPO (P87053) F-box/WD-repeat protein pof1 (Skp1-binding protein 1)| Length = 605 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 114 ASPVRIALHSHASDAYPPAAKAEECYSLNPKSSNIPSVSFIPYATQ 251 +SPV+ A D YP ++ E S+ P S N S F+P+ T+ Sbjct: 202 SSPVKKA----KLDDYPTSSNEETISSVKPPSPNSDSKFFLPFKTR 243
>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13| Length = 974 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 16/66 (24%) Frame = +3 Query: 93 PSTGSCGASPVRIALHSHASDAYPPAAKAEECYS----------------LNPKSSNIPS 224 P+TG+ S +R A + AS PP + ++ NP + PS Sbjct: 378 PTTGASPISALRAAREARASSPSPPTSSHRNSFAAARASPVGRAATLANDTNPNVARRPS 437 Query: 225 VSFIPY 242 +SF P+ Sbjct: 438 ISFQPF 443
>YNIC_ECOLI (P77247) Phosphatase yniC (EC 3.1.3.-)| Length = 222 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -3 Query: 144 ANARRFELEKPHRNLYLDCDTFFGLQGMMAV 52 A+A + KPH +YLDC G+ + V Sbjct: 139 ASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV 169
>YNIC_ECO57 (Q7ADF8) Phosphatase yniC (EC 3.1.3.-)| Length = 222 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -3 Query: 144 ANARRFELEKPHRNLYLDCDTFFGLQGMMAV 52 A+A + KPH +YLDC G+ + V Sbjct: 139 ASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV 169
>Y449_MYCBO (P0A5C8) Hypothetical protein Mb0449c| Length = 142 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 99 TGSCGASPVRIALHSHASDAYPPAAK 176 T CG P+R LH A+ P AAK Sbjct: 105 TARCGVVPIRALLHRDAAPDSPTAAK 130
>Y441_MYCTU (P0A5C7) Hypothetical protein Rv0441c/MT0457| Length = 142 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 99 TGSCGASPVRIALHSHASDAYPPAAK 176 T CG P+R LH A+ P AAK Sbjct: 105 TARCGVVPIRALLHRDAAPDSPTAAK 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,950,204 Number of Sequences: 219361 Number of extensions: 842242 Number of successful extensions: 2044 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2043 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
