ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast06e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF4E3_ARATH (Q9FK59) Eukaryotic translation initiation factor 4E... 82 3e-16
2IF4E4_CAEEL (Q22888) Eukaryotic translation initiation factor 4E... 40 0.002
3IF4E3_MOUSE (Q8BMB3) Eukaryotic translation initiation factor 4E... 30 2.1
4IF4E3_HUMAN (O60573) Eukaryotic translation initiation factor 4E... 30 2.1
5SPDYC_HUMAN (Q5MJ68) Speedy protein C (Rapid inducer of G2/M pro... 28 7.9

>IF4E3_ARATH (Q9FK59) Eukaryotic translation initiation factor 4E type 3 (eIF4E|
           type 3) (eIF-4E type 3) (mRNA cap-binding protein type
           3) (Novel cap-binding protein) (nCBP)
          Length = 221

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = -2

Query: 277 RDSIKRHLKLPHTYLMEYKPHDASLRDNSSYRNTWLRG 164
           RDSIKRHLKLPH Y+MEYKPHDASLRDNSSYRNTWLRG
Sbjct: 184 RDSIKRHLKLPHAYVMEYKPHDASLRDNSSYRNTWLRG 221



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>IF4E4_CAEEL (Q22888) Eukaryotic translation initiation factor 4E-4 (eIF4E-4)|
           (eIF-4E-4) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit)
          Length = 212

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = -2

Query: 277 RDSIKRHLKLPHTYLMEYKPHDASLRDNSSYRNT 176
           R++++  L+LP   ++EYK HD  LRD SSYR+T
Sbjct: 173 RETLRSVLQLPQNTVLEYKRHDDCLRDQSSYRHT 206



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>IF4E3_MOUSE (Q8BMB3) Eukaryotic translation initiation factor 4E type 3 (eIF4E|
           type 3) (eIF-4E type 3) (mRNA cap-binding protein type
           3) (Eukaryotic translation initiation factor 4E-like 3)
           (eIF4E-like protein 4E-LP)
          Length = 245

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 277 RDSIKRHLKLPHTYLMEYKPHDASLR 200
           RD+++R L LP   +MEYK H  S++
Sbjct: 197 RDTLRRVLNLPPNTIMEYKTHTDSIK 222



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>IF4E3_HUMAN (O60573) Eukaryotic translation initiation factor 4E type 3 (eIF4E|
           type 3) (eIF-4E type 3) (mRNA cap-binding protein type
           3) (Eukaryotic translation initiation factor 4E-like 3)
           (Eukaryotic translation initiation factor 4E homologous
           protein)
          Length = 245

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 277 RDSIKRHLKLPHTYLMEYKPHDASLR 200
           RD+++R L LP   +MEYK H  S++
Sbjct: 197 RDTLRRVLNLPPNTIMEYKTHTDSIK 222



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>SPDYC_HUMAN (Q5MJ68) Speedy protein C (Rapid inducer of G2/M progression in|
           oocytes C) (RINGO C) (hSpy/Ringo C)
          Length = 293

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 32  FCRVHGSMTKSNHTS-WLG*NFRTENPQGLSSREGP*LALTTWRLTSQPCVPVGRVVSQR 208
           F R H  +++  H+S +L      +  + L   EGP   +  W L    C+ VG+ + QR
Sbjct: 96  FQRAHLKLSEYTHSSLFLALYLANDMEEDL---EGPKCEIFPWALGKDWCLRVGKFLHQR 152

Query: 209 GIMW 220
             +W
Sbjct: 153 DKLW 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,804,963
Number of Sequences: 219361
Number of extensions: 664094
Number of successful extensions: 1378
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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