ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast06d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PALH_DEBHA (Q6BPR6) pH-response regulator protein palH/RIM21 28 8.1
2PGK_CAEEL (P91427) Probable phosphoglycerate kinase (EC 2.7.2.3) 28 8.1

>PALH_DEBHA (Q6BPR6) pH-response regulator protein palH/RIM21|
          Length = 537

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 198 ICIPEDFCQPCNSLRLLIEKVEILSKSFYMLSSIDDVRYH*KPF*MFVD 52
           + IP ++C   NS+    EK  +L + FY     +D  Y    F +FVD
Sbjct: 316 VVIPWEWCNKYNSIMKAKEKEGVLGRKFY-----EDELYELDRFELFVD 359



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>PGK_CAEEL (P91427) Probable phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 417

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 158 NELHG*QKSSGIQIHFPVSLINREKIVVETTN 253
           NEL    K+ G+QIH PV  +  +K   + T+
Sbjct: 266 NELLEAAKAKGVQIHLPVDFVIADKFAEDATS 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,132,762
Number of Sequences: 219361
Number of extensions: 553001
Number of successful extensions: 1180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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