>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)|
          Length = 1176

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 259  PRTPWAASSPTTNSCSSCHMHLDGVHRIWLSC 164
            P++P ++++P T + SSC  +  G    W+SC
Sbjct: 1027 PQSPTSSATPATTASSSCTTNPSGPASPWISC 1058

>VGLL1_HUMAN (Q99990) Transcription cofactor vestigial-like protein 1 (Vgl-1)|
           (TONDU protein)
          Length = 258

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 274 WRCASPRTPWAASSPTTNSCSSCHMHLDG 188
           WR +SP T      P TN  ++C++H+ G
Sbjct: 80  WRYSSPWTKPQPEVPVTNRAANCNLHVPG 108

>HIPL1_ARATH (Q9SSG3) HIPL1 protein precursor|
          Length = 695

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 256 RTPWAASSPTTNSCSSCHMHLDGVH 182
           R P  +SSP+++S SSC+ H++G H
Sbjct: 653 RNPGTSSSPSSSS-SSCYKHINGFH 676

>ACRA_ECOLI (P0AE06) Acriflavine resistance protein A precursor|
          Length = 397

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 45  KSSTYLLRSNMCYTHVTCPATTPISGSHVTSYALV 149
           K++    R N+ YT VT P +  I  S+VT  ALV
Sbjct: 161 KAAVETARINLAYTKVTSPISGRIGKSNVTEGALV 195

>ACRA_ECO57 (P0AE07) Acriflavine resistance protein A precursor|
          Length = 397

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 45  KSSTYLLRSNMCYTHVTCPATTPISGSHVTSYALV 149
           K++    R N+ YT VT P +  I  S+VT  ALV
Sbjct: 161 KAAVETARINLAYTKVTSPISGRIGKSNVTEGALV 195

>SH3BG_HUMAN (P55822) SH3 domain-binding glutamic acid-rich protein (SH3BGR|
           protein) (21-glutamic acid-rich protein) (21-GARP)
          Length = 239

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 268 CASPRTPWAASSPTTNSCSSCH 203
           C SP  PWAA+SP       CH
Sbjct: 18  CRSPVDPWAAASPDLALACLCH 39

>SRPR_HUMAN (P08240) Signal recognition particle receptor alpha subunit|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
          Length = 638

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 128 CHILRAGTVGQ---HTRQPDAVHPIKVHVTRT 214
           C   RAG V Q   HTR+  A+HP + H  RT
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRT 485

>ACRE_ECOLI (P24180) Acriflavine resistance protein E precursor (Protein envC)|
          Length = 385

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 24  DSTLQLYKSSTYLLRSNMCYTHVTCPATTPISGSHVTSYALV 149
           D+ +   K++    R N+ YT VT P +  I  S VT  ALV
Sbjct: 153 DAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALV 194

>DHSB_CHOCR (P48932) Succinate dehydrogenase [ubiquinone] iron-sulfur protein|
           (EC 1.3.5.1) (IP)
          Length = 250

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 217 CSSCHMHLDGVHRIWLSCMLSYGTSA*DVTWLPL 116
           C SC M++DG +   L+C+ S  T +  +T  PL
Sbjct: 78  CGSCSMNIDGTNS--LACLRSLNTKSNFITIYPL 109

>PFA3_DEBHA (Q6BMV2) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 3)
          Length = 405

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 114 SVWSPDMSHVCNTC 73
           SVW PD  H C+TC
Sbjct: 173 SVWKPDRCHHCSTC 186

>GDF9_CAPHI (Q66NC0) Growth/differentiation factor 9 precursor (GDF-9)|
          Length = 453

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 ELQEFVVGEEAAHGVRGEAH 269
           EL  + VGEEAA GVR   H
Sbjct: 297 ELSAYPVGEEAAEGVRSSRH 316

>DHSB_PORPU (P80477) Succinate dehydrogenase [ubiquinone] iron-sulfur protein|
           (EC 1.3.5.1) (IP)
          Length = 239

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 217 CSSCHMHLDGVHRIWLSCMLSYGTSA*DVTWLPL 116
           C SC M++DG++   L+C+    T+A  +T  PL
Sbjct: 68  CGSCSMNIDGINT--LACLKPIKTNANIITIYPL 99

>SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha subunit|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
          Length = 636

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 128 CHILRAGTVGQ---HTRQPDAVHPIKVHVTRT 214
           C   RAG V Q   HTR+  A+HP + H  RT
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRT 483


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,814,990
Number of Sequences: 219361
Number of extensions: 1029312
Number of successful extensions: 3041
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3036
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)