ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast06c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependen... 555 e-155
2gb|BT009245.1| Triticum aestivum clone wlk1.pk0018.d4:fis, full ... 488 e-135
3gb|AY621539.1| Triticum aestivum glutamine-dependent asparagine ... 287 9e-75
4gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRN... 64 3e-07
5gb|BT009049.1| Triticum aestivum clone wdk9n1.pk001.f6:fis, full... 64 3e-07
6gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 3.7
7emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chro... 40 3.7
8emb|Y10196.1|HSPEX Homo sapiens PHEX gene 40 3.7
9emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, ... 40 3.7
10gb|AC084880.12| Homo sapiens 12 BAC RP11-64B16 (Roswell Park Can... 40 3.7
11gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map ... 40 3.7
12gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map ... 40 3.7
13gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-... 40 3.7
14gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Canc... 40 3.7

>gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine
            synthetase 1 mRNA, complete cds
          Length = 1973

 Score =  555 bits (280), Expect = e-155
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                        
Query: 6    agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 65
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 1914

                                                                        
Query: 66   tcaaccttaggtctgcatcactctaatggcaagactaggtacatcttatttcttatcaga 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 tcaaccttaggtctgcatcactctaatggcaagactaggtacatcttatttcttatcaga 1854

                                                                        
Query: 126  aacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacctt 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 aacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacctt 1794

                                                                        
Query: 186  gatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctc 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctc 1734

                                                    
Query: 246  ataggccgagagatggactccaagtgctgctctccctgag 285
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 ataggccgagagatggactccaagtgctgctctccctgag 1694



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>gb|BT009245.1| Triticum aestivum clone wlk1.pk0018.d4:fis, full insert mRNA sequence
          Length = 2064

 Score =  488 bits (246), Expect = e-135
 Identities = 277/286 (96%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggattagaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatc 60
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1963 ggattagaaatcatccggtctccgatttcataagaacaatagaaacattaatgcacaatc 1904

                                                                        
Query: 61   ttcactcaa-ccttaggtctgcatcactctaatggcaagactaggtacatcttatttctt 119
            ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1903 ttcactcaaaccttaggtctgcaccactctaatggcaagaccaggtacatcttatttctt 1844

                                                                        
Query: 120  atcagaaacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgc 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1843 atcagaaacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgc 1784

                                                                        
Query: 180  aaccttgatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctc 239
            ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 aacctcgatcatccttggcttcttgctggttcctgccatgatggttgctgggagatgctc 1724

                                                          
Query: 240  ctgctcataggccgagagatggactccaagtgctgctctccctgag 285
            ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 ctgttcataggccgagagatggactccaagtgctgctctccctgag 1678



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>gb|AY621539.1| Triticum aestivum glutamine-dependent asparagine synthetase (ASN1)
            mRNA, complete cds
          Length = 1815

 Score =  287 bits (145), Expect = 9e-75
 Identities = 154/157 (98%)
 Strand = Plus / Minus

                                                                        
Query: 129  ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaaccttgat 188
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 1800 ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgcaacctcgat 1741

                                                                        
Query: 189  catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctcata 248
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1740 catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgttcata 1681

                                                 
Query: 249  ggccgagagatggactccaagtgctgctctccctgag 285
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1680 ggccgagagatggactccaagtgctgctctccctgag 1644



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>gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRNA, complete cds
          Length = 1867

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 238  tcctgctcataggccgagagatggactccaagtgctgctctccc 281
            |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 1670 tcctgctcgtaggctgagagatggactccaagcgctgctctccc 1627



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>gb|BT009049.1| Triticum aestivum clone wdk9n1.pk001.f6:fis, full insert mRNA
            sequence
          Length = 2119

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 238  tcctgctcataggccgagagatggactccaagtgctgctctccc 281
            |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 1739 tcctgctcgtaggctgagagatggactccaagcgctgctctccc 1696



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 233     gatgctcctgctcataggcc 252
               ||||||||||||||||||||
Sbjct: 2224484 gatgctcctgctcataggcc 2224503



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>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the
            3' end of the COL4A2 gene for collagen type IV alpha 2,
            the RAB20 gene for a RAS oncogene family member, a novel
            gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel
            gene (FLJ12118) and three CpG islands, complete sequence
          Length = 177392

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 200  tcttgctggttcctgccatgatgg 223
            |||||||| |||||||||||||||
Sbjct: 8457 tcttgctgtttcctgccatgatgg 8480



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>emb|Y10196.1|HSPEX Homo sapiens PHEX gene
          Length = 242825

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ctatagaaacattaatgcac 56
             ||||||||||||||||||||
Sbjct: 22051 ctatagaaacattaatgcac 22070



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>emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, complete sequence
          Length = 115459

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ttcactcaaccttaggtctg 80
             ||||||||||||||||||||
Sbjct: 16589 ttcactcaaccttaggtctg 16570



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>gb|AC084880.12| Homo sapiens 12 BAC RP11-64B16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    ctgatttcataagaactatagaaa 45
             ||||| ||||||||||||||||||
Sbjct: 64664 ctgatctcataagaactatagaaa 64641



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>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete
             sequence
          Length = 187429

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ccttaggtctgcatcactct 89
             ||||||||||||||||||||
Sbjct: 14165 ccttaggtctgcatcactct 14184



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>gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map 15q22, complete sequence
          Length = 173411

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     ccttaggtctgcatcactct 89
              ||||||||||||||||||||
Sbjct: 152367 ccttaggtctgcatcactct 152386



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>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence
          Length = 38476

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ctatagaaacattaatgcac 56
             ||||||||||||||||||||
Sbjct: 31688 ctatagaaacattaatgcac 31707



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>gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Cancer Institute Human PAC
             library) complete sequence
          Length = 153836

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ttcactcaaccttaggtctg 80
             ||||||||||||||||||||
Sbjct: 21723 ttcactcaaccttaggtctg 21704


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,552,117
Number of Sequences: 3902068
Number of extensions: 2552117
Number of successful extensions: 48550
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48526
Number of HSP's gapped (non-prelim): 23
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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