| Clone Name | rbast06c12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF307145.1| Hordeum vulgare subsp. vulgare glutamine-dependent asparagine synthetase 1 mRNA, complete cds Length = 1973 Score = 555 bits (280), Expect = e-155 Identities = 280/280 (100%) Strand = Plus / Minus Query: 6 agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 agaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatcttcac 1914 Query: 66 tcaaccttaggtctgcatcactctaatggcaagactaggtacatcttatttcttatcaga 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1913 tcaaccttaggtctgcatcactctaatggcaagactaggtacatcttatttcttatcaga 1854 Query: 126 aacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacctt 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1853 aacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaacctt 1794 Query: 186 gatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctc 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1793 gatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctc 1734 Query: 246 ataggccgagagatggactccaagtgctgctctccctgag 285 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1733 ataggccgagagatggactccaagtgctgctctccctgag 1694
>gb|BT009245.1| Triticum aestivum clone wlk1.pk0018.d4:fis, full insert mRNA sequence Length = 2064 Score = 488 bits (246), Expect = e-135 Identities = 277/286 (96%), Gaps = 1/286 (0%) Strand = Plus / Minus Query: 1 ggattagaaatcatccggtctctgatttcataagaactatagaaacattaatgcacaatc 60 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 1963 ggattagaaatcatccggtctccgatttcataagaacaatagaaacattaatgcacaatc 1904 Query: 61 ttcactcaa-ccttaggtctgcatcactctaatggcaagactaggtacatcttatttctt 119 ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 1903 ttcactcaaaccttaggtctgcaccactctaatggcaagaccaggtacatcttatttctt 1844 Query: 120 atcagaaacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1843 atcagaaacggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgc 1784 Query: 180 aaccttgatcatcctcggcttcttgctggttcctgccatgatggttgctgggagatgctc 239 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1783 aacctcgatcatccttggcttcttgctggttcctgccatgatggttgctgggagatgctc 1724 Query: 240 ctgctcataggccgagagatggactccaagtgctgctctccctgag 285 ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1723 ctgttcataggccgagagatggactccaagtgctgctctccctgag 1678
>gb|AY621539.1| Triticum aestivum glutamine-dependent asparagine synthetase (ASN1) mRNA, complete cds Length = 1815 Score = 287 bits (145), Expect = 9e-75 Identities = 154/157 (98%) Strand = Plus / Minus Query: 129 ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggtgccgcaaccttgat 188 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct: 1800 ggcaagcaggacaggacaccatcaactctcaattgcgacaccaggcgccgcaacctcgat 1741 Query: 189 catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgctcata 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1740 catcctcggcttcttgctggttcctgccatgatggttgctgggagatgctcctgttcata 1681 Query: 249 ggccgagagatggactccaagtgctgctctccctgag 285 ||||||||||||||||||||||||||||||||||||| Sbjct: 1680 ggccgagagatggactccaagtgctgctctccctgag 1644
>gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRNA, complete cds Length = 1867 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 238 tcctgctcataggccgagagatggactccaagtgctgctctccc 281 |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 1670 tcctgctcgtaggctgagagatggactccaagcgctgctctccc 1627
>gb|BT009049.1| Triticum aestivum clone wdk9n1.pk001.f6:fis, full insert mRNA sequence Length = 2119 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 238 tcctgctcataggccgagagatggactccaagtgctgctctccc 281 |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 1739 tcctgctcgtaggctgagagatggactccaagcgctgctctccc 1696
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gatgctcctgctcataggcc 252 |||||||||||||||||||| Sbjct: 2224484 gatgctcctgctcataggcc 2224503
>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the 3' end of the COL4A2 gene for collagen type IV alpha 2, the RAB20 gene for a RAS oncogene family member, a novel gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel gene (FLJ12118) and three CpG islands, complete sequence Length = 177392 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 tcttgctggttcctgccatgatgg 223 |||||||| ||||||||||||||| Sbjct: 8457 tcttgctgtttcctgccatgatgg 8480
>emb|Y10196.1|HSPEX Homo sapiens PHEX gene Length = 242825 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctatagaaacattaatgcac 56 |||||||||||||||||||| Sbjct: 22051 ctatagaaacattaatgcac 22070
>emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, complete sequence Length = 115459 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ttcactcaaccttaggtctg 80 |||||||||||||||||||| Sbjct: 16589 ttcactcaaccttaggtctg 16570
>gb|AC084880.12| Homo sapiens 12 BAC RP11-64B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110001 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 ctgatttcataagaactatagaaa 45 ||||| |||||||||||||||||| Sbjct: 64664 ctgatctcataagaactatagaaa 64641
>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete sequence Length = 187429 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ccttaggtctgcatcactct 89 |||||||||||||||||||| Sbjct: 14165 ccttaggtctgcatcactct 14184
>gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map 15q22, complete sequence Length = 173411 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ccttaggtctgcatcactct 89 |||||||||||||||||||| Sbjct: 152367 ccttaggtctgcatcactct 152386
>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence Length = 38476 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctatagaaacattaatgcac 56 |||||||||||||||||||| Sbjct: 31688 ctatagaaacattaatgcac 31707
>gb|AC005344.1| Homo sapiens 12 PAC RPCI1-53O8 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 153836 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ttcactcaaccttaggtctg 80 |||||||||||||||||||| Sbjct: 21723 ttcactcaaccttaggtctg 21704 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,552,117 Number of Sequences: 3902068 Number of extensions: 2552117 Number of successful extensions: 48550 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48526 Number of HSP's gapped (non-prelim): 23 length of query: 285 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 263 effective length of database: 17,147,199,772 effective search space: 4509713540036 effective search space used: 4509713540036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)