>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 167 SLSTIQRNHSQGNGLGGISGERRPC 93
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317

>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C|
           suppressor SKC1)
          Length = 1155

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
 Frame = +3

Query: 24  PVRAPTYPTPLKSFHKVGLESS--------STGSSFPADSAKPVPLAVVSLDSRQGQWES 179
           P +  T PTP  + H + L SS        ST S F  +S K       +  +   Q+  
Sbjct: 172 PNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKTQNRRSSNSSNHSSQYRR 231

Query: 180 R*SIHARH*LDDE----AFGYLKRVIVTPAVYPRLVEFLHFDIQST 305
             + H RH    +    +   +  +  TP VYP L+  +    + T
Sbjct: 232 HTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLIAIKFKQT 277

>SYD_THEAC (Q9HJM1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 428

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 57  KSFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQGQWESR 182
           KS  K G+E S T  S   ++  P+PL VV  D  Q   E+R
Sbjct: 77  KSISKAGIEISGTSISIVNEAEAPLPLPVV--DPVQADLETR 116

>KI18A_MOUSE (Q91WD7) Kinesin family member 18A|
          Length = 886

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 60  SFHKVGLESSSTGSSFPADSAKPVPLAVVSLDSRQGQWESR*SIHARH*LDDEAFGYLKR 239
           S H++   S ST  S P  +  P  +A+ +   R+  W+   S        DE+ G+ KR
Sbjct: 784 SVHRIESSSFSTKDSMPESAGVPSYMAMTTAAKRK--WKQMSSTSNASIKSDESCGFAKR 841

Query: 240 V 242
           +
Sbjct: 842 I 842

>HBA1_PLEWA (P06639) Hemoglobin alpha-1 subunit (Hemoglobin alpha-1 chain)|
           (Alpha-1-globin) (Hemoglobin alpha-major chain)
          Length = 141

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 177 IPTVPVYYPAKPQPRERAWRNQRGKKTLLSLT 82
           +PT  +Y+PAK      ++ +  GKK + +LT
Sbjct: 36  MPTTRIYFPAKDLSERSSYLHSHGKKVVGALT 67

>ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 54  LKSFHKVGLESSSTGSSFPADSAKPVP 134
           L+S H+  LESS  GSS PA    P P
Sbjct: 93  LRSAHRRELESSGAGSSPPAAPCPPPP 119

>MATK_CYRRA (Q8WIV4) Maturase K (Intron maturase)|
          Length = 513

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 257 GGSNYDSLKVAKCLVI*LVTRMNGLTRFPLSLSTIQRNHSQGN 129
           G  N  SL + K L+  L+T+M    RF  S +   +NH  G+
Sbjct: 47  GYDNKSSLLIVKRLITHLITQMYQQNRFIFSANDSNQNHFLGH 89

>HETR_ANAVT (Q9F5Y3) Heterocyst differentiation control protein (EC 3.4.21.-)|
          Length = 299

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 231 GSQMPRHLISDAHEWINEIPTVP 163
           GSQ PR+LI   + W+ + P +P
Sbjct: 96  GSQEPRYLIQFPYVWMEQYPWIP 118

>HETR_ANASP (P27709) Heterocyst differentiation control protein (EC 3.4.21.-)|
          Length = 298

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 231 GSQMPRHLISDAHEWINEIPTVP 163
           GSQ PR+LI   + W+ + P +P
Sbjct: 95  GSQEPRYLIQFPYVWMEQYPWIP 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,781,399
Number of Sequences: 219361
Number of extensions: 829244
Number of successful extensions: 2094
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)