ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast06a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 52 0.001
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AK104076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
4dbj|AK103551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5dbj|AK061835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AB037150.1| Oryza sativa (japonica cultivar-group) OsRPN8 mR... 52 0.001
7ref|XM_749538.1| Aspergillus fumigatus Af293 nuclear exosome com... 42 1.0
8gb|AY106142.1| Zea mays PCO072430 mRNA sequence 42 1.0
9gb|AC073324.6| Homo sapiens BAC clone RP11-339F13 from 7, comple... 40 4.1
10gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, com... 40 4.1
11emb|AL512639.8| Human DNA sequence from clone RP11-346G21 on chr... 40 4.1
12gb|AC009721.9| Homo sapiens 12q24.1-116.6-118.9 BAC RP11-129O9 (... 40 4.1
13gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, com... 40 4.1
14emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, c... 40 4.1
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
16dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
17emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on ch... 40 4.1 
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                         
Query: 198   agctcacagaatgtaaggttttgtcgttgacctcgtcgcacatgaagtaaacatc-aaag 256
             |||||||||||||||| | |||| |||||||||  ||| ||||||| |||||||| ||||
Sbjct: 26698 agctcacagaatgtaaag-tttgccgttgaccttatcgtacatgaaataaacatcgaaag 26640

                   
Query: 257   tgtaaa 262
             ||||||
Sbjct: 26639 tgtaaa 26634



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 122   aatccgcatcaccaaacatgatgcgacacatgaaaca 158
             |||||||||||| |||||||||||  | |||||||||
Sbjct: 26780 aatccgcatcacaaaacatgatgcaccccatgaaaca 26744
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                            
Query: 198      agctcacagaatgtaaggttttgtcgttgacctcgtcgcacatgaagtaaacatc-aaag 256
                |||||||||||||||| | |||| |||||||||  ||| ||||||| |||||||| ||||
Sbjct: 33814799 agctcacagaatgtaaag-tttgccgttgaccttatcgtacatgaaataaacatcgaaag 33814741

                      
Query: 257      tgtaaa 262
                ||||||
Sbjct: 33814740 tgtaaa 33814735



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 122      aatccgcatcaccaaacatgatgcgacacatgaaaca 158
                |||||||||||| |||||||||||  | |||||||||
Sbjct: 33814881 aatccgcatcacaaaacatgatgcaccccatgaaaca 33814845
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>dbj|AK104076.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-C08, full
            insert sequence
          Length = 1325

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                        
Query: 198  agctcacagaatgtaaggttttgtcgttgacctcgtcgcacatgaagtaaacatc-aaag 256
            |||||||||||||||| | |||| |||||||||  ||| ||||||| |||||||| ||||
Sbjct: 1238 agctcacagaatgtaaag-tttgccgttgaccttatcgtacatgaaataaacatcgaaag 1180

                  
Query: 257  tgtaaa 262
            ||||||
Sbjct: 1179 tgtaaa 1174



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 122  aatccgcatcaccaaacatgatgcgacacatgaaaca 158
            |||||||||||| |||||||||||  | |||||||||
Sbjct: 1320 aatccgcatcacaaaacatgatgcaccccatgaaaca 1284
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>dbj|AK103551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132F12, full
            insert sequence
          Length = 1431

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                        
Query: 198  agctcacagaatgtaaggttttgtcgttgacctcgtcgcacatgaagtaaacatc-aaag 256
            |||||||||||||||| | |||| |||||||||  ||| ||||||| |||||||| ||||
Sbjct: 1311 agctcacagaatgtaaag-tttgccgttgaccttatcgtacatgaaataaacatcgaaag 1253

                  
Query: 257  tgtaaa 262
            ||||||
Sbjct: 1252 tgtaaa 1247



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 122  aatccgcatcaccaaacatgatgcgacacatgaaaca 158
            |||||||||||| |||||||||||  | |||||||||
Sbjct: 1393 aatccgcatcacaaaacatgatgcaccccatgaaaca 1357
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>dbj|AK061835.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D07, full
            insert sequence
          Length = 1373

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                        
Query: 198  agctcacagaatgtaaggttttgtcgttgacctcgtcgcacatgaagtaaacatc-aaag 256
            |||||||||||||||| | |||| |||||||||  ||| ||||||| |||||||| ||||
Sbjct: 1253 agctcacagaatgtaaag-tttgccgttgaccttatcgtacatgaaataaacatcgaaag 1195

                  
Query: 257  tgtaaa 262
            ||||||
Sbjct: 1194 tgtaaa 1189



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 122  aatccgcatcaccaaacatgatgcgacacatgaaaca 158
            |||||||||||| |||||||||||  | |||||||||
Sbjct: 1335 aatccgcatcacaaaacatgatgcaccccatgaaaca 1299
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>dbj|AB037150.1| Oryza sativa (japonica cultivar-group) OsRPN8 mRNA for 26S proteasome
            regulatory particle non-ATPase subunit8, complete cds
          Length = 1308

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Minus

                                                                        
Query: 198  agctcacagaatgtaaggttttgtcgttgacctcgtcgcacatgaagtaaacatc-aaag 256
            |||||||||||||||| | |||| |||||||||  ||| ||||||| |||||||| ||||
Sbjct: 1223 agctcacagaatgtaaag-tttgccgttgaccttatcgtacatgaaataaacatcgaaag 1165

                  
Query: 257  tgtaaa 262
            ||||||
Sbjct: 1164 tgtaaa 1159
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>ref|XM_749538.1| Aspergillus fumigatus Af293 nuclear exosome complex 3'-5'
           exonuclease subunit (Afu3g09880) partial mRNA
          Length = 2295

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 216 ttttgtcgttgacctcgtcgc 236
           |||||||||||||||||||||
Sbjct: 161 ttttgtcgttgacctcgtcgc 181
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>gb|AY106142.1| Zea mays PCO072430 mRNA sequence
          Length = 554

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 239 atgaagtaaacatcaaagtgtaaattgaaggtcaagacacttggt 283
           ||||| ||||||||||| |||  ||| |||||||||||| |||||
Sbjct: 371 atgaaataaacatcaaaatgtccattcaaggtcaagacaattggt 327
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>gb|AC073324.6| Homo sapiens BAC clone RP11-339F13 from 7, complete sequence
          Length = 125253

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     ttccaaagtaacaagacaac 72
              ||||||||||||||||||||
Sbjct: 120897 ttccaaagtaacaagacaac 120916
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>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence
          Length = 152668

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   ttccaaagtaacaagacaac 72
            ||||||||||||||||||||
Sbjct: 6161 ttccaaagtaacaagacaac 6180
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>emb|AL512639.8| Human DNA sequence from clone RP11-346G21 on chromosome 9, complete
              sequence
          Length = 164774

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    taaacatcaaagtgtaaatt 264
              ||||||||||||||||||||
Sbjct: 143970 taaacatcaaagtgtaaatt 143951
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>gb|AC009721.9| Homo sapiens 12q24.1-116.6-118.9 BAC RP11-129O9 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 166765

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   agtaaacatcaaagtgtaaa 262
             ||||||||||||||||||||
Sbjct: 68724 agtaaacatcaaagtgtaaa 68743
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>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence
          Length = 162877

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    tagagctcacagaatgtaag 214
              ||||||||||||||||||||
Sbjct: 120164 tagagctcacagaatgtaag 120145
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>emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, complete sequence
          Length = 177714

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   accaaacatgatgcgacaca 151
             ||||||||||||||||||||
Sbjct: 88407 accaaacatgatgcgacaca 88426
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 75      tgtaaagtggcagtgatgtttctc 98
               ||||| ||||||||||||||||||
Sbjct: 8226186 tgtaacgtggcagtgatgtttctc 8226209
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>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0450F09
          Length = 148752

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    tgtaaagtggcagtgatgtttctc 98
             ||||| ||||||||||||||||||
Sbjct: 50108 tgtaacgtggcagtgatgtttctc 50131
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>emb|AL731709.19| Mouse DNA sequence from clone RP23-316M14 on chromosome 2, complete
             sequence
          Length = 211034

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   aattgaaggtcaagacacttggta 284
             ||||||| ||||||||||||||||
Sbjct: 51067 aattgaaagtcaagacacttggta 51044


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,897,209
Number of Sequences: 3902068
Number of extensions: 2897209
Number of successful extensions: 52498
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52438
Number of HSP's gapped (non-prelim): 61
length of query: 314
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 292
effective length of database: 17,147,199,772
effective search space: 5006982333424
effective search space used: 5006982333424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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