>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 344 LKERRDHALCSSQFPEKSAKD*LAVHSQFKSKD 246
           L ER+D  L S + PE S +  L VHS+ KSK+
Sbjct: 532 LPERKDFPLESIKLPEVSVEPVLTVHSENKSKN 564

>POLG_WMV2T (Q89251) Genome polyprotein [Contains: Nuclear inclusion protein B|
           (NI-B) (NIB) (RNA-directed RNA polymerase) (EC
           2.7.7.48); Coat protein (CP)] (Fragment)
          Length = 455

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 82  ARTCYKQKENTTNTHAVTLHRTWLSFTIAHSRECCNAISLQRGRKTERN 228
           A T  ++     NT    L R        H   CC ++SLQ G++T  N
Sbjct: 134 AETALRKLYTNVNTQPNELQRYLEVLDFNHIDGCCESVSLQSGKETVEN 182

>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 82   ARTCYKQKENTTNTHAVTLHRTWLSFTIAHSRECCNAISLQRGRKTE 222
            A T  ++     N     L R        H+ +CC ++SLQ G++ E
Sbjct: 2761 AETALRKLYTDVNAQTSELQRYLEVLDFTHADDCCESVSLQSGKEKE 2807

>POLG_WMV2U (P18478) Genome polyprotein [Contains: Nuclear inclusion protein A|
           (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49
           kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB)
           (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat
           protein (CP)] (Fragment
          Length = 1016

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 82  ARTCYKQKENTTNTHAVTLHRTWLSFTIAHSRECCNAISLQRGRKTERN 228
           A T  ++     NT    L R        H   CC ++SLQ G++T  N
Sbjct: 695 AETALRKLYTDVNTQPSELQRYLEVLDFNHIDGCCESVSLQSGKETVEN 743

>POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 82   ARTCYKQKENTTNTHAVTLHRTWLSFTIAHSRECCNAISLQRGRKTE 222
            A T  ++     N     L R        H+ +CC ++SLQ G++ E
Sbjct: 2761 AETALRKLYTDVNAQTSELQRYLEVLDFNHADDCCESVSLQSGKEKE 2807

>MAM33_YEAST (P40513) Mitochondrial acidic protein MAM33, mitochondrial|
           precursor
          Length = 266

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 115 TNTHAVTLHRTWLSFTIAHSRECCNAISLQRGRKTER 225
           T      +  +W  FT+A+S+ C    ++ R ++T+R
Sbjct: 16  TTPKPAVVKSSWRVFTVANSKRCFTPAAIMRNQETQR 52

>PACR_RAT (P32215) Pituitary adenylate cyclase-activating polypeptide type IA|
           receptor precursor (PACAP type IA receptor) (PACAP-R-1)
          Length = 523

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 224 LSVFLPLWRLIALQHSLECAIVKESQVRCKVTACVFVVFSFCL 96
           +SVF+  W L A Q S  C +   S V CK    V V F +C+
Sbjct: 200 ISVFIKDWILYAEQDSSHCFV---STVECK---AVMVFFHYCV 236

>PACR_MOUSE (P70205) Pituitary adenylate cyclase-activating polypeptide type I|
           receptor precursor (PACAP type I receptor) (PACAP-R-1)
          Length = 496

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 224 LSVFLPLWRLIALQHSLECAIVKESQVRCKVTACVFVVFSFCL 96
           +SVF+  W L A Q S  C +   S V CK    V V F +C+
Sbjct: 201 ISVFIKDWILYAEQDSSHCFV---STVECK---AVMVFFHYCV 237

>PACR_HUMAN (P41586) Pituitary adenylate cyclase-activating polypeptide type I|
           receptor precursor (PACAP type I receptor) (PACAP-R-1)
          Length = 468

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 224 LSVFLPLWRLIALQHSLECAIVKESQVRCKVTACVFVVFSFCL 96
           +SVF+  W L A Q S  C I   S V CK    V V F +C+
Sbjct: 201 ISVFIKDWILYAEQDSNHCFI---STVECK---AVMVFFHYCV 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,654,941
Number of Sequences: 219361
Number of extensions: 947196
Number of successful extensions: 2022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)