ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast05g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY017388.1| Hypserpa nitida internal transcribed spacer 1, pa... 36 5.5
2dbj|AP005401.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 36 5.5

>gb|AY017388.1| Hypserpa nitida internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 558

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 5   aaaaaggggacccccttg 22
           ||||||||||||||||||
Sbjct: 526 aaaaaggggacccccttg 543



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>dbj|AP005401.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-60H9, complete
             sequence
          Length = 75877

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     aggggacccccttgatta 26
             ||||||||||||||||||
Sbjct: 19059 aggggacccccttgatta 19076


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,333
Number of Sequences: 3902068
Number of extensions: 157333
Number of successful extensions: 34609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34606
Number of HSP's gapped (non-prelim): 3
length of query: 45
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 25
effective length of database: 17,155,003,908
effective search space: 428875097700
effective search space used: 428875097700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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