ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast05e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y258_METJA (Q57706) Hypothetical protein MJ0258 29 3.7
2EFTU_CHLTR (P26622) Elongation factor Tu (EF-Tu) 28 6.3

>Y258_METJA (Q57706) Hypothetical protein MJ0258|
          Length = 404

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 234 VEGHAVADGRLDALPAAGAELKNVERARVNR 142
           +E + +A GR DAL A  + LKN E + +N+
Sbjct: 183 LENYKIAGGRKDALTAKFSSLKNAELSFINK 213



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>EFTU_CHLTR (P26622) Elongation factor Tu (EF-Tu)|
          Length = 393

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 139 HTVYTCALYILQLRSGGR 192
           HT + CA+Y+LQ   GGR
Sbjct: 301 HTQFKCAVYVLQKEEGGR 318


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,866,240
Number of Sequences: 219361
Number of extensions: 584529
Number of successful extensions: 1477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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