ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast05d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DIG1_CAEEL (Q09165) Mesocentin precursor 31 0.77
2UBR1_KLULA (O60014) Ubiquitin-protein ligase E3 component N-reco... 28 6.5

>DIG1_CAEEL (Q09165) Mesocentin precursor|
          Length = 13100

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +2

Query: 8    IIPHITYVF----LYITNPTCF--PCYKISSPHGSAPP*KISKGDN*IQ 136
            ++P   YVF    +Y   P+ F  PC   + P G+AP  +IS GDN ++
Sbjct: 1774 LLPDTDYVFKMRAIYPDGPSVFSEPCIMKTLPDGNAPYIQISTGDNGVE 1822



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>UBR1_KLULA (O60014) Ubiquitin-protein ligase E3 component N-recognin-1 (EC|
            6.-.-.-) (N-end-recognizing protein)
          Length = 1945

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 2    LCIIPHITYVFLYITNPTCFPCYKISSP----HGSAPP*KISKGD 124
            L +IP+I+ V LY++ P C     IS+P    HG +    I +GD
Sbjct: 1697 LFLIPNISQVCLYLSRPDC--TVNISAPYLNSHGESGRNAIERGD 1739


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,159,211
Number of Sequences: 219361
Number of extensions: 470512
Number of successful extensions: 1183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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