ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast05d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 521 e-145
2ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.89
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.89
4gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 0.89
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.89
6dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.89
7gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 3.5
8emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 3.5
9gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, comple... 40 3.5
10emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 3.5
11gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 3.5

>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  521 bits (263), Expect = e-145
 Identities = 263/263 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   agtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaaacattcac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 agtgtttccatcatattcatgtgtcgctcatgcatagtgtatattgttggaaacattcac 709

                                                                       
Query: 68  ttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgttattt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttattttgcataaaatgggaaatatactaggaacggtcgacaaaccgtaagccgttattt 649

                                                                       
Query: 128 agaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactctcctc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agaacctcggtcttggcaacgagcacagcgccgtgaatcacatcaacgcccactctcctc 589

                                                                       
Query: 188 ctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctggagcgtcca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctagtgaatggccgatgcgagtaacttaacttagatgtgcttgaagtcctggagcgtcca 529

                                  
Query: 248 tcgcccatctccccccttgacca 270
           |||||||||||||||||||||||
Sbjct: 528 tcgcccatctccccccttgacca 506



to top

>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 245 ccatcgcccatctcccccctt 265
           |||||||||||||||||||||
Sbjct: 176 ccatcgcccatctcccccctt 196



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 245      ccatcgcccatctcccccctt 265
                |||||||||||||||||||||
Sbjct: 35925005 ccatcgcccatctcccccctt 35925025



to top

>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   ccatcgcccatctcccccctt 265
             |||||||||||||||||||||
Sbjct: 36120 ccatcgcccatctcccccctt 36100



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 245      ccatcgcccatctcccccctt 265
                |||||||||||||||||||||
Sbjct: 36015135 ccatcgcccatctcccccctt 36015155



to top

>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
           insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 245 ccatcgcccatctcccccctt 265
           |||||||||||||||||||||
Sbjct: 196 ccatcgcccatctcccccctt 216



to top

>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    attttgcataaaatgggaaa 89
             ||||||||||||||||||||
Sbjct: 73416 attttgcataaaatgggaaa 73435



to top

>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    ttcacttattttgcataaaa 82
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603



to top

>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    taaaatgggaaatatactag 97
             ||||||||||||||||||||
Sbjct: 81268 taaaatgggaaatatactag 81249



to top

>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     gaaacattcacttattttgc 76
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708



to top

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 190     agtgaatggccgatgcgagt 209
               ||||||||||||||||||||
Sbjct: 6301611 agtgaatggccgatgcgagt 6301630


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,955,675
Number of Sequences: 3902068
Number of extensions: 1955675
Number of successful extensions: 36577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36551
Number of HSP's gapped (non-prelim): 26
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top