ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast04g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480204.1| Oryza sativa (japonica cultivar-group), mRNA 137 3e-29
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
3dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
4dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
5dbj|AK059267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
6gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome... 90 6e-15
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
8dbj|AK063413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
9gb|AY105468.1| Zea mays PCO107031 mRNA sequence 48 0.019
10ref|XM_720710.1| Plasmodium yoelii yoelii str. 17XNL elongation ... 40 4.6
11ref|XM_673005.1| Plasmodium berghei strain ANKA elongation facto... 40 4.6
12gb|AC158913.4| Mus musculus chromosome 5, clone RP24-268J3, comp... 40 4.6
13emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 4.6
14dbj|AK041279.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 4.6 
>ref|XM_480204.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1369

 Score =  137 bits (69), Expect = 3e-29
 Identities = 108/121 (89%)
 Strand = Plus / Minus

                                                                        
Query: 225  atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 284
            |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 1067 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 1008

                                                                        
Query: 285  gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 344
            |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 1007 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 948

             
Query: 345  t 345
            |
Sbjct: 947  t 947
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  137 bits (69), Expect = 3e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                           
Query: 225     atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 284
               |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 3515438 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 3515497

                                                                           
Query: 285     gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 344
               |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 3515498 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 3515557

                
Query: 345     t 345
               |
Sbjct: 3515558 t 3515558
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498E12
          Length = 153523

 Score =  137 bits (69), Expect = 3e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                          
Query: 225    atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 284
              |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 148857 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 148916

                                                                          
Query: 285    gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 344
              |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 148917 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 148976

               
Query: 345    t 345
              |
Sbjct: 148977 t 148977
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score =  137 bits (69), Expect = 3e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                         
Query: 225   atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 284
             |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 71155 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 71214

                                                                         
Query: 285   gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 344
             |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 71215 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 71274

              
Query: 345   t 345
             |
Sbjct: 71275 t 71275
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>dbj|AK059267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B05, full
            insert sequence
          Length = 1369

 Score =  137 bits (69), Expect = 3e-29
 Identities = 108/121 (89%)
 Strand = Plus / Minus

                                                                        
Query: 225  atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactttg 284
            |||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||| |||  
Sbjct: 1067 atcaatctacagccatggcatctgaagcaccgccgctaacttcctctatgctcatcttct 1008

                                                                        
Query: 285  gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattgaga 344
            |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct: 1007 gctcttcagtggcagctctcagctcatctgctatgctcctctgctcatcatcgatcgaga 948

             
Query: 345  t 345
            |
Sbjct: 947  t 947
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>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0040E06, complete sequence
          Length = 160907

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 106/124 (85%), Gaps = 3/124 (2%)
 Strand = Plus / Plus

                                                                         
Query: 225   atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactt-t 283
             ||||||||| |||||| ||||| |||||| ||||||| ||||| ||| ||||||  || |
Sbjct: 69661 atcagtctaaagccatggcatctgaagcatcgccgctaccttcatctgtgctcatgttct 69720

                                                                         
Query: 284   g--gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattg 341
             |  |||||||||   |||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 69721 gctgctcttcagcgccagctctcagctcatccgctatgctcctctgctcatcttcgattg 69780

                 
Query: 342   agat 345
             ||||
Sbjct: 69781 agat 69784
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 106/124 (85%), Gaps = 3/124 (2%)
 Strand = Plus / Plus

                                                                            
Query: 225      atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactt-t 283
                ||||||||| |||||| ||||| |||||| ||||||| ||||| ||| ||||||  || |
Sbjct: 28136986 atcagtctaaagccatggcatctgaagcatcgccgctaccttcatctgtgctcatgttct 28137045

                                                                            
Query: 284      g--gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattg 341
                |  |||||||||   |||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 28137046 gctgctcttcagcgccagctctcagctcatccgctatgctcctctgctcatcttcgattg 28137105

                    
Query: 342      agat 345
                ||||
Sbjct: 28137106 agat 28137109
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>dbj|AK063413.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B06, full
           insert sequence
          Length = 1196

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 106/124 (85%), Gaps = 3/124 (2%)
 Strand = Plus / Minus

                                                                       
Query: 225 atcagtctacagccattgcatccgaagcaccgccgctgccttcctctatgctcaactt-t 283
           ||||||||| |||||| ||||| |||||| ||||||| ||||| ||| ||||||  || |
Sbjct: 900 atcagtctaaagccatggcatctgaagcatcgccgctaccttcatctgtgctcatgttct 841

                                                                       
Query: 284 g--gctcttcagtagcagctctcagctcatctgctatgttcctttgctcatcttcgattg 341
           |  |||||||||   |||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 840 gctgctcttcagcgccagctctcagctcatccgctatgctcctctgctcatcttcgattg 781

               
Query: 342 agat 345
           ||||
Sbjct: 780 agat 777
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>gb|AY105468.1| Zea mays PCO107031 mRNA sequence
          Length = 970

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 298 agctctcagctcatctgctatgttcctttgctcatcttcgattgagat 345
           |||||||||||||||||||||  || | ||||||||||| || |||||
Sbjct: 824 agctctcagctcatctgctatactcttctgctcatcttcaatcgagat 777
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>ref|XM_720710.1| Plasmodium yoelii yoelii str. 17XNL elongation factor 2 (PY05356)
            partial mRNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   tgaatctggagaacatatta 36
            ||||||||||||||||||||
Sbjct: 1539 tgaatctggagaacatatta 1558
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>ref|XM_673005.1| Plasmodium berghei strain ANKA elongation factor 2 (PB000800.00.0)
            partial mRNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   tgaatctggagaacatatta 36
            ||||||||||||||||||||
Sbjct: 1539 tgaatctggagaacatatta 1558
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>gb|AC158913.4| Mus musculus chromosome 5, clone RP24-268J3, complete sequence
          Length = 152822

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tctgaatctggagaacatat 34
             ||||||||||||||||||||
Sbjct: 64873 tctgaatctggagaacatat 64892
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     tctacagccattgcatccga 249
               ||||||||||||||||||||
Sbjct: 1484385 tctacagccattgcatccga 1484366
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>dbj|AK041279.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530096N14
            product:unclassifiable, full insert sequence
          Length = 3669

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 15   tctgaatctggagaacatat 34
            ||||||||||||||||||||
Sbjct: 1353 tctgaatctggagaacatat 1372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,523,439
Number of Sequences: 3902068
Number of extensions: 2523439
Number of successful extensions: 43407
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43353
Number of HSP's gapped (non-prelim): 54
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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