>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial|
           ribosomal protein 51)
          Length = 360

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 42  SGFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATS*PYTNKWIRHHH 191
           SGF++    R   +  +  TSK   KQ +  + ++A   P   KW++ HH
Sbjct: 124 SGFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173

>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 474

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 274 CLWSTNY--V*STTVLFTRALQLVVGTWSWWW 185
           CL +TNY  + S T++  R LQL++   + WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359

>NU4M_MACRO (P92668) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 274 CLWSTNY--V*STTVLFTRALQLVVGTWSWWW 185
           CL +TNY  + S T++  R LQL++     WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMCTWW 359

>RP54_RALEU (P28615) RNA polymerase sigma-54 factor|
          Length = 493

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 101 EQTCTQTNTRLGFKASYELAIH*QMDSPPPPGPGTHNELEC 223
           E+ CT+    L F+     AI   + S  PPG G  N  EC
Sbjct: 177 EEICTELPEELEFEIEEVHAILTLLQSFDPPGVGARNAAEC 217

>PME_MEDSA (Q42920) Pectinesterase precursor (EC 3.1.1.11) (Pectin|
           methylesterase) (PE) (P65)
          Length = 447

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 73  GGLREIIFSRANMYTNKHKAWIQG*LRASHTLTNGFATTT 192
           G L +  F + + Y    K W+ G L    T  +GFA TT
Sbjct: 20  GTLDQFDFHKLSEYAFDLKVWLTGTLSHQQTCLDGFANTT 59

>XYLH_HAEIN (P45045) Xylose transport system permease protein xylH (EC|
           3.6.3.17)
          Length = 375

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 241 TVLFTRALQLVVGTWSWWW 185
           T++ T AL L+ G W+ WW
Sbjct: 94  TIIATIALGLIFGIWNGWW 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,981,815
Number of Sequences: 219361
Number of extensions: 1040978
Number of successful extensions: 3142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3129
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)