ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast04b12 |
|---|---|
| Clone Library Name | barley_pub |
>FDHD_PHOLL (Q7MY11) Protein fdhD homolog| Length = 276 Score = 30.8 bits (68), Expect = 0.93 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL + RR+LAGR GC Sbjct: 94 GIELQIELSSRRFAGLKERRRNLAGRTGC 122
>FDHD_SHIFL (Q83PE5) Protein fdhD| Length = 277 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL + RR+LAGR GC Sbjct: 93 GLEVQIELSSRRFMGLKERRRALAGRTGC 121
>FDHD_ECOLI (P32177) Protein fdhD| Length = 277 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL + RR+LAGR GC Sbjct: 93 GLEVQIELSSRRFMGLKERRRALAGRTGC 121
>FDHD_ECOL6 (Q8FBE5) Protein fdhD| Length = 277 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL + RR+LAGR GC Sbjct: 93 GLEVQIELSSRRFMGLKERRRALAGRTGC 121
>FDHD_ECO57 (Q8X8B5) Protein fdhD| Length = 277 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL + RR+LAGR GC Sbjct: 93 GLEVQIELSSRRFMGLKERRRALAGRTGC 121
>RS4_DROME (P41042) 40S ribosomal protein S4| Length = 261 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 42 KQSLGAKQVPFHSTHNGLINKSPKQKVNSNSS 137 K LGAK VPF TH+G + P +++N S Sbjct: 128 KTQLGAKGVPFLVTHDGRTIRYPDPLIHANDS 159
>FDHD_HAEIN (P44449) Protein fdhD homolog| Length = 270 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGCND------RQVFDCYKAALYAWYFQLELLFT 119 G +++ SSR L + RR+L GR GC QV+ + + F L LL + Sbjct: 88 GIEVQIELSSRKFMALKEHRRNLTGRTGCGICGTEQLNQVYKTFPKLDCTFQFDLNLLDS 147 Query: 118 FCLGDLLMSPL 86 CL DL + L Sbjct: 148 -CLIDLQKNQL 157
>FDHD_HAEI8 (Q4QPN9) Protein fdhD homolog| Length = 270 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGCND------RQVFDCYKAALYAWYFQLELLFT 119 G +++ SSR L + RR+L GR GC QV+ + + F L LL + Sbjct: 88 GIEVQIELSSRKFMALKEHRRNLTGRTGCGICGTEQLNQVYKTFPKLDCTFQFDLNLLDS 147 Query: 118 FCLGDLLMSPL 86 CL DL + L Sbjct: 148 -CLIDLQKNQL 157
>FDHD_YERPS (Q663U8) Protein fdhD homolog| Length = 274 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G + + SSR GL + RR++AGR GC Sbjct: 93 GIEVNIELSSRRFAGLKERRRAMAGRTGC 121
>FDHD_YERPE (Q8Z9X7) Protein fdhD homolog| Length = 274 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G + + SSR GL + RR++AGR GC Sbjct: 93 GIEVNIELSSRRFAGLKERRRAMAGRTGC 121
>FDHD_ERWCT (Q6DB09) Protein fdhD homolog| Length = 277 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL + RRS+ GR GC Sbjct: 95 GIEVQIELSSRRFAGLKERRRSMDGRTGC 123
>FDHD_SALTY (Q8ZKS7) Protein fdhD| Length = 278 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL RR+LAGR GC Sbjct: 93 GLEVQIDLSSRRFMGLKARRRALAGRTGC 121
>FDHD_SALTI (Q8Z2U7) Protein fdhD| Length = 278 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL RR+LAGR GC Sbjct: 93 GLEVQIDLSSRRFMGLKARRRALAGRTGC 121
>FDHD_SALPA (Q5PKG0) Protein fdhD| Length = 278 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL RR+LAGR GC Sbjct: 93 GLEVQIDLSSRRFMGLKARRRALAGRTGC 121
>FDHD_SALCH (Q57HH9) Protein fdhD| Length = 278 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G +++ SSR GL RR+LAGR GC Sbjct: 93 GLEVQIDLSSRRFMGLKARRRALAGRTGC 121
>GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subunit-like| protein (GPB-LR) (RWD) Length = 334 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -1 Query: 281 GYTDGTIRVFKIQAGFA 231 GYTDGTIR++KI +GF+ Sbjct: 316 GYTDGTIRIYKI-SGFS 331
>FDHD_RALEU (O87816) Protein fdhD homolog (Protein fdsC)| Length = 288 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 280 GTPMELSGSSRSRPGLPDMRRSLAGRRGC 194 G ++L +S + L D RRSLAGR GC Sbjct: 99 GIAVQLEIASEAFMRLKDRRRSLAGRTGC 127
>LNX2_MOUSE (Q91XL2) Ligand of Numb-protein X 2 (Numb-binding protein 2)| Length = 687 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 276 HRWNYQGLQDPGRVCRICVGVLL 208 H +NYQG D VC IC+ LL Sbjct: 37 HLYNYQGEVDDDLVCHICLQPLL 59
>TILS_STRR6 (Q8DRP9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 425 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 25 IESSRQNKALVRNRSPSIVLIMGSSTNHLSRK 120 I ++N AL+ + IV I+G +TN+LS+K Sbjct: 377 IPMEKRNSALIIEQFGEIVSILGIATNNLSKK 408
>TILS_STRPN (Q97TC5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 425 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 25 IESSRQNKALVRNRSPSIVLIMGSSTNHLSRK 120 I ++N AL+ + IV I+G +TN+LS+K Sbjct: 377 IPMEKRNSALIIEQFGEIVSILGIATNNLSKK 408 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,932,162 Number of Sequences: 219361 Number of extensions: 702064 Number of successful extensions: 1864 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1864 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
