>MSRA_SCHPO (Q09859) Probable peptide methionine sulfoxide reductase (EC|
           1.8.4.6) (Protein-methionine-S-oxide reductase) (Peptide
           Met(O) reductase)
          Length = 170

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
 Frame = +2

Query: 53  TSSLTANDGGQEICTNPQNHQLITKISPDSQL-----------ELHSPRTNKQTQVYGTS 199
           T  +TA+   +E+CTN  NH    KI  D +L            +H P T+ Q    G  
Sbjct: 36  TGGITADPTYKEVCTNTTNHAEALKIEFDEKLTSYDKIIEFFFAMHDPTTSNQ---QGND 92

Query: 200 TNRKYSASTLT---KLFSTTSRT*DRGSLQNLPVQKT*TQVL 316
              +Y ++  T   +  +   R  +    ++ P +K  TQ+L
Sbjct: 93  IGTQYRSAIFTTNPEQATIAKRVMNEVQAKHYPNKKIVTQIL 134

>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)|
          Length = 1285

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 320 PFGYIVVAPATVREASSDAFKGPHAPV*KLM*GMTLS 430
           P G++ VA AT RE    AF G +A   +L+ G++L+
Sbjct: 863 PDGFVCVAEATFREGPPAAFSGHNASSGRLLGGLSLA 899

>TRK2_SCHPO (Q10065) Potassium transport protein 2|
          Length = 880

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 32  SEFSKTITSSLTANDGGQEICTNPQNHQLITKISPDSQLELHSPRTNKQTQVYGTSTN 205
           S  S    S  TANDG QE  ++  ++   T++  D  +  +SP+ +        +TN
Sbjct: 295 SSISSHNPSLETANDGNQETVSSSNSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTN 352

>MIG1_YEAST (P27705) Regulatory protein MIG1 (Regulatory protein CAT4)|
          Length = 504

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 11  LLQKSQKSEFSKTITSSLTANDGGQEICT----NPQNHQLITKISPDSQLELHSPRTNKQ 178
           L ++S+K   + T T+ L+ +  G  + T      QNH   +  SPD Q EL++   N Q
Sbjct: 359 LQEQSRKKSKTSTPTTMLSRSTSGTNLHTLGYVMNQNHLHFSSSSPDFQKELNNRLLNVQ 418

Query: 179 TQ 184
            Q
Sbjct: 419 QQ 420

>MBHS_OLICA (O33405) Uptake hydrogenase small subunit precursor (EC 1.12.99.6)|
           (Hydrogenlyase) (Membrane-bound hydrogenase small
           subunit)
          Length = 360

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 265 PRFTSESSSAENVNPSPDAIWLYRCGTSNCT*SFIR 372
           P +TSE + A    P    +WL+    + C+ SFIR
Sbjct: 36  PAYTSEIAHAMETKPRTPVLWLHGLECTCCSESFIR 71

>OPP23_HAEIN (P46025) Outer membrane protein P2 precursor (OMP P2)|
          Length = 385

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = +2

Query: 5   NLLLQKSQKSEFSKTITSSLTANDGGQEICTNPQNHQLITKISPDSQLELHSPRTNKQTQ 184
           +L L  S  S ++KT   + T +  G +  TNP   +  + +SP  Q EL      + T 
Sbjct: 260 DLGLLVSLDSGYAKTKYYTTTDSSSGSQTITNPAYDEKRSFVSPGFQYEL-----MEDTN 314

Query: 185 VYGTSTNRKYSASTLTK 235
           VYG   N KY  +++ +
Sbjct: 315 VYG---NFKYERTSVNQ 328

>OPP24_HAEIN (P46026) Outer membrane protein P2 precursor (OMP P2)|
          Length = 386

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 5   NLLLQKSQKSEFSKT-ITSSLTANDGGQEICTNPQNHQLITKISPDSQLELHSPRTNKQT 181
           +L L  S  S ++KT   ++ T +D G++  TNP   +  + +SP  Q EL      + T
Sbjct: 260 DLGLLVSLDSGYAKTKYHTTTTDSDDGRQTITNPAYDEKRSFVSPGFQYEL-----MEDT 314

Query: 182 QVYGTSTNRKYSASTLTK 235
            VYG   N KY  +++ +
Sbjct: 315 NVYG---NFKYERTSVNQ 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,959,668
Number of Sequences: 219361
Number of extensions: 1157526
Number of successful extensions: 3002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2995
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)