ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast03d08 |
|---|---|
| Clone Library Name | barley_pub |
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 34.3 bits (77), Expect = 0.072 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +3 Query: 192 TTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS--SLIQPEHRPLAPRQ 338 T PR P P RP+QG P P PP + P H PL+P+Q Sbjct: 518 TPPRPPGPPAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMSLPTHEPLSPQQ 568
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = +3 Query: 198 PRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRP 323 P PS P L PL HP L H P PP L P H+P Sbjct: 54 PAPPSPPAAPCLP--PLAHHPHLPPHPPPPPPQHLAAPAHQP 93
>PSA1_ORYSA (P52428) Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S| proteasome alpha subunit F) (20S proteasome subunit alpha-6) (Proteasome component C2) Length = 270 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = -3 Query: 405 TVEPFSMIDSKRIQEII 355 TVEPF MID KRIQEII Sbjct: 221 TVEPFEMIDVKRIQEII 237
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 31.2 bits (69), Expect = 0.61 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Frame = +3 Query: 192 TTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS--SLIQPEHRPLAPRQ 338 T PR P RP+QG P P PP + P H PL+P+Q Sbjct: 519 TPPRPPGPQAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMPMPVHEPLSPQQ 569
>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) Length = 753 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +3 Query: 93 WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 236 WQ + N +VFL GV + + + T+P CPS+P HL R Sbjct: 14 WQSWLPNHVVFLRLREGVRNQSPAEAEKPAAS-TSPSCPSLPPHLPTR 60
>YERA_BACSU (O34909) Putative adenine deaminase yerA (EC 3.5.4.2) (Adenase)| (Adenine aminase) Length = 580 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -2 Query: 211 DGHLGVVSSDRYVSC--LSHPLVPTPFRVSKKTRLLF*KGCHHCVYSLLLCHYSFVVPAS 38 D +LGVV R S L PL P P V K +L GC ++ H +VP Sbjct: 327 DDYLGVVGPGRLASLNILEDPLNPNPVTVLSKGTILRENGCDLKAFTKTDWHKGGLVPL- 385 Query: 37 GQIDFYLSCDDV 2 ++ + ++ DD+ Sbjct: 386 -ELSYDMTMDDL 396
>IGHE_HUMAN (P01854) Ig epsilon chain C region| Length = 428 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +3 Query: 30 ICPDAGTTKL*WHRSK-----EYTQ*WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDET 194 + P GT L W R+ T+ + N +L TL VGTR W +TY+ T Sbjct: 244 LAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP-VGTRDWIEGETYQCRVT 302 Query: 195 TPRCP 209 P P Sbjct: 303 HPHLP 307
>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)| (Serine/arginine-rich protein-specific kinase 1) (SR-protein-specific kinase 1) (SFRS protein kinase 1) Length = 826 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = +3 Query: 207 PSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLAP 332 P P PLQG P LG R PPA L +PE P P Sbjct: 75 PLFPARPARALGPLQG-PALGGRRRPPPARPLTRPETPPAHP 115
>RAGE_HUMAN (Q15109) Advanced glycosylation end product-specific receptor| precursor (Receptor for advanced glycosylation end products) Length = 404 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +3 Query: 153 RGWDRHDTYRSDETTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLAP 332 RG D T+ + P +P H LR P+Q P++ E P +++PE +AP Sbjct: 198 RGGDPRPTFSCSFS----PGLPRHRALRTAPIQ--PRVWEPVPLEEVQLVVEPEGGAVAP 251
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%) Frame = +3 Query: 198 PRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS------SLIQPEHRPLAP 332 P P P H+ + P HP+ +PCPP S +++P H P P Sbjct: 66 PTTPKHPPHVKPPSTPK--HPKHPPQKPCPPPSHHGPKPPIVKPPHVPRPP 114
>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (Nucleoporin Nup84) Length = 742 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 93 WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 236 WQ + N +VFL G+ + D + T+P CP +P HL R Sbjct: 14 WQSWLPNHVVFLRLREGLKNQSPAEADK-PATSTSPSCPPLPPHLPTR 60
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +3 Query: 192 TTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLAP 332 T+ P+VP PL QL H P +SS+IQ PLAP Sbjct: 524 TSVTMPNVPA-------PLAQSQQLSSHTPVSRSSSIIQHVGLPLAP 563
>GLGB_BORPE (Q7VYK0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 731 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +3 Query: 219 GHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 329 GH VL+A PL + PPA++ I P+ RP A Sbjct: 203 GHTVLKADPLARQAE------APPATASIVPDERPFA 233
>GLGB_BORPA (Q7W6L4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 731 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +3 Query: 219 GHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 329 GH VL+A PL + PPA++ I P+ RP A Sbjct: 203 GHTVLKADPLARQAE------APPATASIVPDERPFA 233
>GLGB_BORBR (Q7WII7) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 731 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +3 Query: 219 GHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 329 GH VL+A PL + PPA++ I P+ RP A Sbjct: 203 GHTVLKADPLARQAE------APPATASIVPDERPFA 233
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +3 Query: 216 PGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRP 323 PG + P+ G Q GE PPASS+ +P Sbjct: 480 PGTSQIEQSPMMGRRQFGEKAWAPPASSMADRSPQP 515
>CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (Cx44)| Length = 412 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +3 Query: 156 GWDRHDTYRSDETTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSL-IQPEHRPLA 329 GW + + T+P P PG A+P+ G P L PPA ++ P + P A Sbjct: 222 GWKK---LKQGMTSPFRPDTPGSRAGSAKPMGGSPLLLPPNSAPPAVTIGFPPYYAPSA 277
>POL_HTLV2 (P03363) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 982 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -3 Query: 186 LIDTCHVCPTPLSQHH 139 L+ TCH C T SQHH Sbjct: 716 LVQTCHTCQTINSQHH 731
>HES1_MOUSE (P35428) Transcription factor HES-1 (Hairy and enhancer of split 1)| Length = 282 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 243 PLQGHPQLGEHRPCPPASSLIQPEHRPLAP 332 P Q HP L + P PP S P+H P AP Sbjct: 156 PGQAHPAL-QAPPPPPPSGPAGPQHAPFAP 184
>CD2_MACFA (Q6SZ61) T-cell surface antigen CD2 precursor| Length = 351 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +3 Query: 255 HPQLGEHRPCPPASSLIQPEHRPLAP 332 +P +H P PP P HRPL P Sbjct: 275 NPAASQHPPPPPGHRSQAPSHRPLPP 300
>MTA70_ARATH (O82486) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 685 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +3 Query: 231 LRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 329 LRAR +P++ P PP +S ++ ++ P+A Sbjct: 647 LRARFKASYPEIDVQPPSPPRASAMETDNEPMA 679
>UPPS_ARCFU (O29049) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 251 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 6/44 (13%) Frame = +2 Query: 47 HHKAVVAQKQRVHTMMATFLKQQSSLFGNS------EWCWDKGV 160 HH A++ R + FG+ EWCWD GV Sbjct: 22 HHIAIIMDGNRRFARKKGLEPHEGHFFGSKKAEEVLEWCWDLGV 65
>ALDO3_ARATH (Q7G9P4) Abscisic-aldehyde oxidase (EC 1.2.3.14) (Aldehyde oxidase| 3) (AtAO-3) (AtAO4) Length = 1332 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/39 (25%), Positives = 19/39 (48%) Frame = -3 Query: 174 CHVCPTPLSQHHSEFPKRLDCCFRKVAIIVCTLCFCATT 58 C C LS++ E + +CC ++C++ C+ T Sbjct: 45 CGACLVVLSKYDPELDQVKECCINSCLTLLCSVNGCSIT 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,207,817 Number of Sequences: 219361 Number of extensions: 1013762 Number of successful extensions: 3099 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2980 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3097 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
