ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast03d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome... 270 4e-69
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 270 4e-69
3dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
4dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
5ref|NM_190656.1| Oryza sativa (japonica cultivar-group), predic... 174 2e-40
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
7dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
8dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
9dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
10ref|XM_479748.1| Oryza sativa (japonica cultivar-group), mRNA 60 7e-06
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
12dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
13dbj|AK070381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
14ref|XM_479739.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
15ref|XM_472181.1| Oryza sativa (japonica cultivar-group), predic... 44 0.40
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
17dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
18dbj|AK110905.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
19emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4,... 44 0.40
20ref|XM_483321.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
21ref|XM_507293.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.6
22ref|XM_479745.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
23dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
25dbj|AK104896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
26dbj|AK068851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
27ref|NM_197365.1| Oryza sativa (japonica cultivar-group) putative... 40 6.2
28gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 40 6.2
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
30dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 6.2
31dbj|AK105942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
32dbj|AK100465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
33gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2 
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01,
             complete sequence
          Length = 126532

 Score =  270 bits (136), Expect = 4e-69
 Identities = 250/288 (86%)
 Strand = Plus / Plus

                                                                         
Query: 176   ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 235
             |||||| | |||||| |||||| ||| |||| |||   ||| |||||| |||||||||| 
Sbjct: 14493 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 14552

                                                                         
Query: 236   ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 295
             || |||||||| | ||| ||||| || ||||| ||||| || || |  ||||||||||||
Sbjct: 14553 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 14612

                                                                         
Query: 296   atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 355
             |||||||||||||||||||| || || || ||||||||||| | |||||||||||| |||
Sbjct: 14613 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 14672

                                                                         
Query: 356   aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 415
             |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 14673 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 14732

                                                             
Query: 416   tcggggttccccagcgggaagcaccggggcgccgcctcccagtccgcc 463
             |||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 14733 tcggggttgcccagcgggaagcaccgcggcgcggcctcccactccgcc 14780
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  270 bits (136), Expect = 4e-69
 Identities = 250/288 (86%)
 Strand = Plus / Plus

                                                                            
Query: 176      ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 235
                |||||| | |||||| |||||| ||| |||| |||   ||| |||||| |||||||||| 
Sbjct: 21895279 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 21895338

                                                                            
Query: 236      ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 295
                || |||||||| | ||| ||||| || ||||| ||||| || || |  ||||||||||||
Sbjct: 21895339 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 21895398

                                                                            
Query: 296      atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 355
                |||||||||||||||||||| || || || ||||||||||| | |||||||||||| |||
Sbjct: 21895399 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 21895458

                                                                            
Query: 356      aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 415
                |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 21895459 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 21895518

                                                                
Query: 416      tcggggttccccagcgggaagcaccggggcgccgcctcccagtccgcc 463
                |||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 21895519 tcggggttgcccagcgggaagcaccgcggcgcggcctcccactccgcc 21895566
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>dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C10, full
            insert sequence
          Length = 1886

 Score =  270 bits (136), Expect = 4e-69
 Identities = 250/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 176  ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 235
            |||||| | |||||| |||||| ||| |||| |||   ||| |||||| |||||||||| 
Sbjct: 1539 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 1480

                                                                        
Query: 236  ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 295
            || |||||||| | ||| ||||| || ||||| ||||| || || |  ||||||||||||
Sbjct: 1479 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 1420

                                                                        
Query: 296  atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 355
            |||||||||||||||||||| || || || ||||||||||| | |||||||||||| |||
Sbjct: 1419 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 1360

                                                                        
Query: 356  aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 415
            |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1359 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 1300

                                                            
Query: 416  tcggggttccccagcgggaagcaccggggcgccgcctcccagtccgcc 463
            |||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 1299 tcggggttgcccagcgggaagcaccgcggcgcggcctcccactccgcc 1252
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>dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104O15, full
            insert sequence
          Length = 1883

 Score =  270 bits (136), Expect = 4e-69
 Identities = 250/288 (86%)
 Strand = Plus / Minus

                                                                        
Query: 176  ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 235
            |||||| | |||||| |||||| ||| |||| |||   ||| |||||| |||||||||| 
Sbjct: 1540 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 1481

                                                                        
Query: 236  ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 295
            || |||||||| | ||| ||||| || ||||| ||||| || || |  ||||||||||||
Sbjct: 1480 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 1421

                                                                        
Query: 296  atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 355
            |||||||||||||||||||| || || || ||||||||||| | |||||||||||| |||
Sbjct: 1420 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 1361

                                                                        
Query: 356  aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 415
            |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1360 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 1301

                                                            
Query: 416  tcggggttccccagcgggaagcaccggggcgccgcctcccagtccgcc 463
            |||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 1300 tcggggttgcccagcgggaagcaccgcggcgcggcctcccactccgcc 1253
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>ref|NM_190656.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2139

 Score =  174 bits (88), Expect = 2e-40
 Identities = 187/220 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 284
            |||||||||| ||||||||||||||||| | |||||| ||||| ||||||||  |  | |
Sbjct: 1408 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 1349

                                                                        
Query: 285  ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 344
            ||||||||||||||||||| ||||||||||| || ||||| |||||||| || |  |  |
Sbjct: 1348 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 1289

                                                                        
Query: 345  tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 404
             |||||| |||||||||||||| || ||||| ||||||||   |||||||||||| ||||
Sbjct: 1288 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 1229

                                                    
Query: 405  gcgccgcgccgtcggggttccccagcgggaagcaccgggg 444
             | |||||||||| ||||| ||||||||||||||||||||
Sbjct: 1228 tcaccgcgccgtccgggttgcccagcgggaagcaccgggg 1189
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  174 bits (88), Expect = 2e-40
 Identities = 187/220 (85%)
 Strand = Plus / Minus

                                                                            
Query: 225      ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 284
                |||||||||| ||||||||||||||||| | |||||| ||||| ||||||||  |  | |
Sbjct: 36789690 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 36789631

                                                                            
Query: 285      ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 344
                ||||||||||||||||||| ||||||||||| || ||||| |||||||| || |  |  |
Sbjct: 36789630 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 36789571

                                                                            
Query: 345      tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 404
                 |||||| |||||||||||||| || ||||| ||||||||   |||||||||||| ||||
Sbjct: 36789570 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 36789511

                                                        
Query: 405      gcgccgcgccgtcggggttccccagcgggaagcaccgggg 444
                 | |||||||||| ||||| ||||||||||||||||||||
Sbjct: 36789510 tcaccgcgccgtccgggttgcccagcgggaagcaccgggg 36789471



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 396      ccatggtgagcgccgcgccgt 416
                |||||||||||||||||||||
Sbjct: 14496296 ccatggtgagcgccgcgccgt 14496316
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>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1096A10
          Length = 150976

 Score =  174 bits (88), Expect = 2e-40
 Identities = 187/220 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 284
            |||||||||| ||||||||||||||||| | |||||| ||||| ||||||||  |  | |
Sbjct: 5268 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 5209

                                                                        
Query: 285  ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 344
            ||||||||||||||||||| ||||||||||| || ||||| |||||||| || |  |  |
Sbjct: 5208 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 5149

                                                                        
Query: 345  tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 404
             |||||| |||||||||||||| || ||||| ||||||||   |||||||||||| ||||
Sbjct: 5148 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 5089

                                                    
Query: 405  gcgccgcgccgtcggggttccccagcgggaagcaccgggg 444
             | |||||||||| ||||| ||||||||||||||||||||
Sbjct: 5088 tcaccgcgccgtccgggttgcccagcgggaagcaccgggg 5049
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>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0529E05
          Length = 134982

 Score =  174 bits (88), Expect = 2e-40
 Identities = 187/220 (85%)
 Strand = Plus / Minus

                                                                          
Query: 225    ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 284
              |||||||||| ||||||||||||||||| | |||||| ||||| ||||||||  |  | |
Sbjct: 116005 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 115946

                                                                          
Query: 285    ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 344
              ||||||||||||||||||| ||||||||||| || ||||| |||||||| || |  |  |
Sbjct: 115945 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 115886

                                                                          
Query: 345    tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 404
               |||||| |||||||||||||| || ||||| ||||||||   |||||||||||| ||||
Sbjct: 115885 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 115826

                                                      
Query: 405    gcgccgcgccgtcggggttccccagcgggaagcaccgggg 444
               | |||||||||| ||||| ||||||||||||||||||||
Sbjct: 115825 tcaccgcgccgtccgggttgcccagcgggaagcaccgggg 115786
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>dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J22, full
            insert sequence
          Length = 2097

 Score =  174 bits (88), Expect = 2e-40
 Identities = 187/220 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 284
            |||||||||| ||||||||||||||||| | |||||| ||||| ||||||||  |  | |
Sbjct: 1543 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 1484

                                                                        
Query: 285  ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 344
            ||||||||||||||||||| ||||||||||| || ||||| |||||||| || |  |  |
Sbjct: 1483 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 1424

                                                                        
Query: 345  tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 404
             |||||| |||||||||||||| || ||||| ||||||||   |||||||||||| ||||
Sbjct: 1423 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 1364

                                                    
Query: 405  gcgccgcgccgtcggggttccccagcgggaagcaccgggg 444
             | |||||||||| ||||| ||||||||||||||||||||
Sbjct: 1363 tcaccgcgccgtccgggttgcccagcgggaagcaccgggg 1324
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>ref|XM_479748.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1625

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 302  ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 361
            |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| |||||||||
Sbjct: 1291 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 1232

                  
Query: 362  ttgccg 367
            ||||||
Sbjct: 1231 ttgccg 1226
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                          
Query: 302    ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 361
              |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| |||||||||
Sbjct: 649758 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 649817

                    
Query: 362    ttgccg 367
              ||||||
Sbjct: 649818 ttgccg 649823



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                          
Query: 298    cttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaa 357
              |||||||||||||||||| || | ||| |||||||||  | ||| ||| ||||| |||||
Sbjct: 646685 cttgccgtcgaacttgttcgcgccgccgctccgcacgctcgccggcctcccccacccgaa 646744

                        
Query: 358    gtcgttgccg 367
              ||||||||||
Sbjct: 646745 gtcgttgccg 646754



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 302    ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 361
              |||||||||||||| || | ||| |||||||||  ||||| ||| ||||| |||||||||
Sbjct: 604473 ccgtcgaacttgttcgcgccgccgctccgcacgctcaccggcctcccccacccgaagtcg 604532

                   
Query: 362    ttgcc 366
              |||||
Sbjct: 604533 ttgcc 604537



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 326    ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
              |||| ||| ||||||| ||| ||||| |||||||||||||||
Sbjct: 590371 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 590412



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 204      cgtcgtcggagaggaggcggc 224
                |||||||||||||||||||||
Sbjct: 25437466 cgtcgtcggagaggaggcggc 25437446



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 326    ctccgcacggccaccgccctgccccaaccgaagtcgttgcc 366
              ||||| ||| |||||| ||| ||||| ||||||||||||||
Sbjct: 626591 ctccggacgcccaccggcctcccccacccgaagtcgttgcc 626631
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>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498H04
          Length = 151046

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 302   ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 361
             |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| |||||||||
Sbjct: 77136 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 77195

                   
Query: 362   ttgccg 367
             ||||||
Sbjct: 77196 ttgccg 77201



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                         
Query: 298   cttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaa 357
             |||||||||||||||||| || | ||| |||||||||  | ||| ||| ||||| |||||
Sbjct: 74063 cttgccgtcgaacttgttcgcgccgccgctccgcacgctcgccggcctcccccacccgaa 74122

                       
Query: 358   gtcgttgccg 367
             ||||||||||
Sbjct: 74123 gtcgttgccg 74132



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 302   ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 361
             |||||||||||||| || | ||| |||||||||  ||||| ||| ||||| |||||||||
Sbjct: 31851 ccgtcgaacttgttcgcgccgccgctccgcacgctcaccggcctcccccacccgaagtcg 31910

                  
Query: 362   ttgcc 366
             |||||
Sbjct: 31911 ttgcc 31915



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 326   ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
             |||| ||| ||||||| ||| ||||| |||||||||||||||
Sbjct: 17749 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 17790



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 326   ctccgcacggccaccgccctgccccaaccgaagtcgttgcc 366
             ||||| ||| |||||| ||| ||||| ||||||||||||||
Sbjct: 53969 ctccggacgcccaccggcctcccccacccgaagtcgttgcc 54009
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>dbj|AK070381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054J24, full
            insert sequence
          Length = 1624

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 302  ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 361
            |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| |||||||||
Sbjct: 1289 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 1230

                  
Query: 362  ttgccg 367
            ||||||
Sbjct: 1229 ttgccg 1224
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>ref|XM_479739.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1835

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 326  ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
            |||| ||| ||||||| ||| ||||| |||||||||||||||
Sbjct: 1321 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 1280
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>ref|XM_472181.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1338

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 326  ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
            ||||| ||| |||||| ||| ||||| |||||||||||||||
Sbjct: 1172 ctccggacgcccaccggcctcccccacccgaagtcgttgccg 1131
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 326      ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
                ||||| ||| |||||| ||| ||||| |||||||||||||||
Sbjct: 18268405 ctccggacgcccaccggcctcccccacccgaagtcgttgccg 18268446
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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 326    ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
              |||| ||| ||||||| ||| ||||| |||||||||||||||
Sbjct: 180331 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 180372
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>dbj|AK110905.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B07, full
            insert sequence
          Length = 1835

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 326  ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
            |||| ||| ||||||| ||| ||||| |||||||||||||||
Sbjct: 1321 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 1280
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>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17,
              complete sequence
          Length = 147111

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 326    ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 367
              ||||| ||| |||||| ||| ||||| |||||||||||||||
Sbjct: 104079 ctccggacgcccaccggcctcccccacccgaagtcgttgccg 104120
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>ref|XM_483321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cgtcgtcggagaggaggcggc 224
           |||||||||||||||||||||
Sbjct: 171 cgtcgtcggagaggaggcggc 151
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>ref|XM_507293.1| PREDICTED Oryza sativa (japonica cultivar-group), P0711H09.20 mRNA
          Length = 1519

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cgtcgtcggagaggaggcggc 224
           |||||||||||||||||||||
Sbjct: 195 cgtcgtcggagaggaggcggc 175
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>ref|XM_479745.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1395

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 326  ctccgcacggccaccgccctgccccaaccgaagtcgttgcc 366
            ||||| ||| |||||| ||| ||||| ||||||||||||||
Sbjct: 1232 ctccggacgcccaccggcctcccccacccgaagtcgttgcc 1192
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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0514H03
          Length = 167230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 396   ccatggtgagcgccgcgccgt 416
             |||||||||||||||||||||
Sbjct: 55609 ccatggtgagcgccgcgccgt 55629
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>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0711H09
          Length = 185858

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   cgtcgtcggagaggaggcggc 224
             |||||||||||||||||||||
Sbjct: 68782 cgtcgtcggagaggaggcggc 68762
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>dbj|AK104896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A11, full
           insert sequence
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cgtcgtcggagaggaggcggc 224
           |||||||||||||||||||||
Sbjct: 171 cgtcgtcggagaggaggcggc 151
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>dbj|AK068851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162F01, full
           insert sequence
          Length = 1518

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 204 cgtcgtcggagaggaggcggc 224
           |||||||||||||||||||||
Sbjct: 194 cgtcgtcggagaggaggcggc 174
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>ref|NM_197365.1| Oryza sativa (japonica cultivar-group) putative gamma-lyase
           (OSJNBa0076F20.6), mRNA
          Length = 1656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 210 cggagaggaggcggcccatggtgtccgg 237
           |||||| |||||||| ||||||||||||
Sbjct: 259 cggagaagaggcggcgcatggtgtccgg 232
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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
              sequence
          Length = 165394

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 210    cggagaggaggcggcccatggtgtccgg 237
              |||||| |||||||| ||||||||||||
Sbjct: 113005 cggagaagaggcggcgcatggtgtccgg 113032
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 210      cggagaggaggcggcccatggtgtccgg 237
                |||||| |||||||| ||||||||||||
Sbjct: 19485139 cggagaagaggcggcgcatggtgtccgg 19485166
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    cctccacgtccacactgcca 268
              ||||||||||||||||||||
Sbjct: 495862 cctccacgtccacactgcca 495843
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>dbj|AK105942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C01, full
           insert sequence
          Length = 1645

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 210 cggagaggaggcggcccatggtgtccgg 237
           |||||| |||||||| ||||||||||||
Sbjct: 306 cggagaagaggcggcgcatggtgtccgg 279
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>dbj|AK100465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092C09, full
           insert sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 210 cggagaggaggcggcccatggtgtccgg 237
           |||||| |||||||| ||||||||||||
Sbjct: 308 cggagaagaggcggcgcatggtgtccgg 281
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 210      cggagaggaggcggcccatggtgtccgg 237
                |||||| |||||||| ||||||||||||
Sbjct: 19496415 cggagaagaggcggcgcatggtgtccgg 19496442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,690,351
Number of Sequences: 3902068
Number of extensions: 2690351
Number of successful extensions: 49125
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48802
Number of HSP's gapped (non-prelim): 318
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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