ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast03b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YICF_ECOLI (P25772) Hypothetical DNA ligase-like protein yicF 28 5.3
2IF2P_METAC (Q8TQL5) Probable translation initiation factor IF-2 28 6.9
3IF2P_METMA (Q8PU78) Probable translation initiation factor IF-2 28 6.9

>YICF_ECOLI (P25772) Hypothetical DNA ligase-like protein yicF|
          Length = 560

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 11  KAWFHFLVDVPCVQNSQWSSC*Q-SPARAYFNMS 109
           K W   L+ + C Q+S W+ C   SPARA   +S
Sbjct: 2   KVWMAILIGILCWQSSVWAVCPAWSPARAQEEIS 35



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>IF2P_METAC (Q8TQL5) Probable translation initiation factor IF-2|
          Length = 597

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 48  YKILNGAAANKVRPVLISI*AIGGITHSNSNRHL---NIIIIVIGLNKE 185
           +KIL G    + +P ++ +  +GG+  +N++  L   N++  + GL  E
Sbjct: 473 FKILPGCVFRQSKPAVVGVRVLGGVVRTNADVMLENGNVVGKIKGLQSE 521



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>IF2P_METMA (Q8PU78) Probable translation initiation factor IF-2|
          Length = 591

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 48  YKILNGAAANKVRPVLISI*AIGGITHSNSNRHL---NIIIIVIGLNKE 185
           +KIL G    + +P ++ +  +GG+  +N++  L   N++  + GL  E
Sbjct: 467 FKILPGCVFRQSKPAVVGVRVLGGVVRTNTDVMLENGNVVGKIKGLQSE 515


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,117,149
Number of Sequences: 219361
Number of extensions: 818995
Number of successful extensions: 1821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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