ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast03b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRFR2_MOUSE (Q60748) Corticotropin-releasing factor receptor 2 p... 29 3.1
2CRFR2_RAT (P47866) Corticotropin-releasing factor receptor 2 pre... 29 3.1
3UPPP_TROWT (Q83GH4) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 28 4.0
4UPPP_TROW8 (Q83HQ7) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 28 4.0
5ORAI1_BRARE (Q6TLE6) Protein orai-1 28 5.3
6COBS_SULSO (Q97TZ6) Cobalamin synthase (EC 2.-.-.-) 28 6.9
7ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 ... 27 9.0

>CRFR2_MOUSE (Q60748) Corticotropin-releasing factor receptor 2 precursor (CRF-R|
           2) (CRF2) (Corticotropin-releasing hormone receptor 2)
           (CRH-R 2) (CRF-RB) (CRH-R2)
          Length = 431

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 112 VGYCAHRVEITCALVVFLVSRSVRC 38
           +G+C   V +  A ++FLV RS+RC
Sbjct: 142 LGHCVSVVALVAAFLLFLVLRSIRC 166



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>CRFR2_RAT (P47866) Corticotropin-releasing factor receptor 2 precursor (CRF-R|
           2) (CRF2) (Corticotropin-releasing hormone receptor 2)
           (CRH-R 2)
          Length = 411

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 112 VGYCAHRVEITCALVVFLVSRSVRC 38
           +G+C   V +  A ++FLV RS+RC
Sbjct: 122 LGHCVSVVALVAAFLLFLVLRSIRC 146



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>UPPP_TROWT (Q83GH4) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 279

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 276 FLPIGQTGQGDAHVIIMMPLLNMIVPSRRFFTLYKL 383
           FLPI  T    AH+ I+  LLN+ VP R F +  +L
Sbjct: 17  FLPISST----AHMYILAKLLNLHVPGRFFLSSVQL 48



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>UPPP_TROW8 (Q83HQ7) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 279

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 276 FLPIGQTGQGDAHVIIMMPLLNMIVPSRRFFTLYKL 383
           FLPI  T    AH+ I+  LLN+ VP R F +  +L
Sbjct: 17  FLPISST----AHMYILAKLLNLHVPGRFFLSSVQL 48



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>ORAI1_BRARE (Q6TLE6) Protein orai-1|
          Length = 222

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 352 GTIIFNKGIIMITWASPCPVCPIGKK 275
           GT++F  G++++ W    P+ P G+K
Sbjct: 122 GTLLFLAGVVLLCWVKFLPIKPKGQK 147



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>COBS_SULSO (Q97TZ6) Cobalamin synthase (EC 2.-.-.-)|
          Length = 253

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = -1

Query: 382 NLYNVKNLLDGTII-FNKGIIMITWASPCPVCPIGKKLSWKKKGRSYCIL----PHIQYF 218
           +LY +  L+   ++  +  + +++  SP P   +G+    K KG+S  +L    P I  +
Sbjct: 131 SLYTIFYLISSNVLSMSLSLYILSTISPIPESNLGRIFHDKLKGKSTILLLELIPFISLY 190

Query: 217 LIFNCLIFWLII 182
            +   +IF++I+
Sbjct: 191 NVIVFIIFYMIM 202



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>ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 (EC 3.6.3.1)|
           (Aminophospholipid flippase 2)
          Length = 1107

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 226 QYFLIFNCLIFWLIISPYSAVET 158
           QYFL+  CL  W +I+P +   T
Sbjct: 47  QYFLLIACLQLWSLITPVNPAST 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,875,235
Number of Sequences: 219361
Number of extensions: 998701
Number of successful extensions: 2010
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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