| Clone Name | rbast03b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009463.1| Triticum aestivum clone wr1.pk0004.c11:fis, full insert mRNA sequence Length = 904 Score = 109 bits (55), Expect = 5e-21 Identities = 103/119 (86%) Strand = Plus / Minus Query: 109 aaagaccaacctaaggcaaaatccaaacaagcaaaaaagctccttttctcaacttctggc 168 |||| ||||||||||||||||||| |||||| |||| |||||||||| ||||| |||| Sbjct: 841 aaagtccaacctaaggcaaaatccgaacaagtgaaaaccctccttttctaaacttgtggc 782 Query: 169 tgcacgtctgcgtgcaacaaatgactaaaacccgtcttacgctccttttgctaggttga 227 ||||| | || |||||||| ||||||||| |||||||||| || ||| ||||||||||| Sbjct: 781 tgcacttttgtgtgcaacagatgactaaagcccgtcttacacttcttctgctaggttga 723 Score = 95.6 bits (48), Expect = 8e-17 Identities = 63/68 (92%) Strand = Plus / Minus Query: 230 gaccaaaactgagctcaaaatgactagagtacatcaatccatcaatggatagagcaatgt 289 ||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 702 gaccaaaactgggttgaaagtgactagagtacatcaatccatcaatggatagagcaacgt 643 Query: 290 ggcacatg 297 |||||||| Sbjct: 642 ggcacatg 635
>gb|BT008970.1| Triticum aestivum clone wdk1c.pk014.n5:fis, full insert mRNA sequence Length = 1609 Score = 109 bits (55), Expect = 5e-21 Identities = 103/119 (86%) Strand = Plus / Minus Query: 109 aaagaccaacctaaggcaaaatccaaacaagcaaaaaagctccttttctcaacttctggc 168 |||| ||||||||||||||||||| |||||| |||| |||||||||| ||||| |||| Sbjct: 1427 aaagtccaacctaaggcaaaatccgaacaagtgaaaaccctccttttctaaacttgtggc 1368 Query: 169 tgcacgtctgcgtgcaacaaatgactaaaacccgtcttacgctccttttgctaggttga 227 ||||| | || |||||||| ||||||||| |||||||||| || ||| ||||||||||| Sbjct: 1367 tgcacttttgtgtgcaacagatgactaaagcccgtcttacacttcttctgctaggttga 1309 Score = 95.6 bits (48), Expect = 8e-17 Identities = 63/68 (92%) Strand = Plus / Minus Query: 230 gaccaaaactgagctcaaaatgactagagtacatcaatccatcaatggatagagcaatgt 289 ||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 1288 gaccaaaactgggttgaaagtgactagagtacatcaatccatcaatggatagagcaacgt 1229 Query: 290 ggcacatg 297 |||||||| Sbjct: 1228 ggcacatg 1221
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 agaccaaaactgagctcaaaatgac 253 ||||||| ||||||||||||||||| Sbjct: 1246783 agaccaatactgagctcaaaatgac 1246807
>gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, complete sequence Length = 226672 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 125 caaaatccaaacaagcaaaaaagctcctt 153 ||||| |||||||||||||||| |||||| Sbjct: 72913 caaaaaccaaacaagcaaaaaacctcctt 72885
>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence Length = 200282 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Plus Query: 125 caaaatccaaacaagcaaaaaagctcctt 153 ||||| |||||||||||||||| |||||| Sbjct: 35078 caaaaaccaaacaagcaaaaaacctcctt 35106
>gb|AC165251.2| Mus musculus BAC clone RP24-75C16 from chromosome 13, complete sequence Length = 207075 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 gaccaaaactgagctcaaaat 250 ||||||||||||||||||||| Sbjct: 171860 gaccaaaactgagctcaaaat 171880
>gb|AC166833.4| Mus musculus BAC clone RP23-146A22 from chromosome 8, complete sequence Length = 200720 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caaaatccaaacaagcaaaa 144 |||||||||||||||||||| Sbjct: 169827 caaaatccaaacaagcaaaa 169808
>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1, complete sequence Length = 117939 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 aaactgagctcaaaatgact 254 |||||||||||||||||||| Sbjct: 78985 aaactgagctcaaaatgact 78966
>gb|AC087286.12| Homo sapiens chromosome 15, clone RP11-815J21, complete sequence Length = 193549 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aaaatccaaacaagcaaaaa 145 |||||||||||||||||||| Sbjct: 53918 aaaatccaaacaagcaaaaa 53937
>gb|AC164311.4| Mus musculus BAC clone RP23-144H18 from chromosome 8, complete sequence Length = 190693 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caaaatccaaacaagcaaaa 144 |||||||||||||||||||| Sbjct: 16429 caaaatccaaacaagcaaaa 16410
>gb|AC099771.9| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-72621, Complete Sequence, complete sequence Length = 256933 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aaatccaaacaagcaaaaaa 146 |||||||||||||||||||| Sbjct: 228618 aaatccaaacaagcaaaaaa 228599
>gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163115 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aaagctccttttctcaactt 163 |||||||||||||||||||| Sbjct: 100109 aaagctccttttctcaactt 100090
>gb|AC109607.47| Mus musculus strain C57BL/6J clone rp23-146a22 map 8, complete sequence Length = 200759 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caaaatccaaacaagcaaaa 144 |||||||||||||||||||| Sbjct: 169855 caaaatccaaacaagcaaaa 169836
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ggcaaaatccaaacaagcaaaaaa 146 |||||||||||| ||||||||||| Sbjct: 341317 ggcaaaatccaaccaagcaaaaaa 341340
>emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-74H1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171409 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aaagctccttttctcaactt 163 |||||||||||||||||||| Sbjct: 86448 aaagctccttttctcaactt 86467
>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete sequence Length = 284268 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aaagctccttttctcaactt 163 |||||||||||||||||||| Sbjct: 164096 aaagctccttttctcaactt 164077
>emb|AL672073.8| Mouse DNA sequence from clone RP23-333P16 on chromosome X, complete sequence Length = 216812 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caaaatccaaacaagcaaaa 144 |||||||||||||||||||| Sbjct: 202715 caaaatccaaacaagcaaaa 202696
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 atccatcaatggatagagca 285 |||||||||||||||||||| Sbjct: 4141123 atccatcaatggatagagca 4141104
>emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-15E14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158214 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aaagctccttttctcaactt 163 |||||||||||||||||||| Sbjct: 4639 aaagctccttttctcaactt 4658 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,448,009 Number of Sequences: 3902068 Number of extensions: 2448009 Number of successful extensions: 49036 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48990 Number of HSP's gapped (non-prelim): 46 length of query: 297 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 275 effective length of database: 17,147,199,772 effective search space: 4715479937300 effective search space used: 4715479937300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)