ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast03b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009463.1| Triticum aestivum clone wr1.pk0004.c11:fis, full ... 109 5e-21
2gb|BT008970.1| Triticum aestivum clone wdk1c.pk014.n5:fis, full ... 109 5e-21
3gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 42 0.99
4gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, co... 42 0.99
5gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, comple... 42 0.99
6gb|AC165251.2| Mus musculus BAC clone RP24-75C16 from chromosome... 42 0.99
7gb|AC166833.4| Mus musculus BAC clone RP23-146A22 from chromosom... 40 3.9
8emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on ... 40 3.9
9gb|AC087286.12| Homo sapiens chromosome 15, clone RP11-815J21, c... 40 3.9
10gb|AC164311.4| Mus musculus BAC clone RP23-144H18 from chromosom... 40 3.9
11gb|AC099771.9| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP... 40 3.9
12gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswel... 40 3.9
13gb|AC109607.47| Mus musculus strain C57BL/6J clone rp23-146a22 m... 40 3.9
14gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold 40 3.9
15emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-7... 40 3.9
16gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20... 40 3.9
17emb|AL672073.8| Mouse DNA sequence from clone RP23-333P16 on chr... 40 3.9
18gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 3.9
19emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-1... 40 3.9

>gb|BT009463.1| Triticum aestivum clone wr1.pk0004.c11:fis, full insert mRNA
           sequence
          Length = 904

 Score =  109 bits (55), Expect = 5e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                       
Query: 109 aaagaccaacctaaggcaaaatccaaacaagcaaaaaagctccttttctcaacttctggc 168
           |||| ||||||||||||||||||| ||||||  ||||  |||||||||| ||||| ||||
Sbjct: 841 aaagtccaacctaaggcaaaatccgaacaagtgaaaaccctccttttctaaacttgtggc 782

                                                                      
Query: 169 tgcacgtctgcgtgcaacaaatgactaaaacccgtcttacgctccttttgctaggttga 227
           ||||| | || |||||||| ||||||||| |||||||||| || ||| |||||||||||
Sbjct: 781 tgcacttttgtgtgcaacagatgactaaagcccgtcttacacttcttctgctaggttga 723



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                       
Query: 230 gaccaaaactgagctcaaaatgactagagtacatcaatccatcaatggatagagcaatgt 289
           ||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 702 gaccaaaactgggttgaaagtgactagagtacatcaatccatcaatggatagagcaacgt 643

                   
Query: 290 ggcacatg 297
           ||||||||
Sbjct: 642 ggcacatg 635



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>gb|BT008970.1| Triticum aestivum clone wdk1c.pk014.n5:fis, full insert mRNA sequence
          Length = 1609

 Score =  109 bits (55), Expect = 5e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                        
Query: 109  aaagaccaacctaaggcaaaatccaaacaagcaaaaaagctccttttctcaacttctggc 168
            |||| ||||||||||||||||||| ||||||  ||||  |||||||||| ||||| ||||
Sbjct: 1427 aaagtccaacctaaggcaaaatccgaacaagtgaaaaccctccttttctaaacttgtggc 1368

                                                                       
Query: 169  tgcacgtctgcgtgcaacaaatgactaaaacccgtcttacgctccttttgctaggttga 227
            ||||| | || |||||||| ||||||||| |||||||||| || ||| |||||||||||
Sbjct: 1367 tgcacttttgtgtgcaacagatgactaaagcccgtcttacacttcttctgctaggttga 1309



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                        
Query: 230  gaccaaaactgagctcaaaatgactagagtacatcaatccatcaatggatagagcaatgt 289
            ||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1288 gaccaaaactgggttgaaagtgactagagtacatcaatccatcaatggatagagcaacgt 1229

                    
Query: 290  ggcacatg 297
            ||||||||
Sbjct: 1228 ggcacatg 1221



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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 229     agaccaaaactgagctcaaaatgac 253
               ||||||| |||||||||||||||||
Sbjct: 1246783 agaccaatactgagctcaaaatgac 1246807



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>gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, complete sequence
          Length = 226672

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 125   caaaatccaaacaagcaaaaaagctcctt 153
             ||||| |||||||||||||||| ||||||
Sbjct: 72913 caaaaaccaaacaagcaaaaaacctcctt 72885



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>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence
          Length = 200282

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 125   caaaatccaaacaagcaaaaaagctcctt 153
             ||||| |||||||||||||||| ||||||
Sbjct: 35078 caaaaaccaaacaagcaaaaaacctcctt 35106



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>gb|AC165251.2| Mus musculus BAC clone RP24-75C16 from chromosome 13, complete sequence
          Length = 207075

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 230    gaccaaaactgagctcaaaat 250
              |||||||||||||||||||||
Sbjct: 171860 gaccaaaactgagctcaaaat 171880



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>gb|AC166833.4| Mus musculus BAC clone RP23-146A22 from chromosome 8, complete sequence
          Length = 200720

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    caaaatccaaacaagcaaaa 144
              ||||||||||||||||||||
Sbjct: 169827 caaaatccaaacaagcaaaa 169808



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>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1, complete
             sequence
          Length = 117939

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   aaactgagctcaaaatgact 254
             ||||||||||||||||||||
Sbjct: 78985 aaactgagctcaaaatgact 78966



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>gb|AC087286.12| Homo sapiens chromosome 15, clone RP11-815J21, complete sequence
          Length = 193549

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   aaaatccaaacaagcaaaaa 145
             ||||||||||||||||||||
Sbjct: 53918 aaaatccaaacaagcaaaaa 53937



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>gb|AC164311.4| Mus musculus BAC clone RP23-144H18 from chromosome 8, complete sequence
          Length = 190693

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   caaaatccaaacaagcaaaa 144
             ||||||||||||||||||||
Sbjct: 16429 caaaatccaaacaagcaaaa 16410



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>gb|AC099771.9| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-72621, Complete
              Sequence, complete sequence
          Length = 256933

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aaatccaaacaagcaaaaaa 146
              ||||||||||||||||||||
Sbjct: 228618 aaatccaaacaagcaaaaaa 228599



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>gb|AC010661.8| Drosophila melanogaster 3L BAC RP98-13A12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163115

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aaagctccttttctcaactt 163
              ||||||||||||||||||||
Sbjct: 100109 aaagctccttttctcaactt 100090



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>gb|AC109607.47| Mus musculus strain C57BL/6J clone rp23-146a22 map 8, complete sequence
          Length = 200759

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    caaaatccaaacaagcaaaa 144
              ||||||||||||||||||||
Sbjct: 169855 caaaatccaaacaagcaaaa 169836



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>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 123    ggcaaaatccaaacaagcaaaaaa 146
              |||||||||||| |||||||||||
Sbjct: 341317 ggcaaaatccaaccaagcaaaaaa 341340



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>emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-74H1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171409

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aaagctccttttctcaactt 163
             ||||||||||||||||||||
Sbjct: 86448 aaagctccttttctcaactt 86467



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>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete
              sequence
          Length = 284268

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aaagctccttttctcaactt 163
              ||||||||||||||||||||
Sbjct: 164096 aaagctccttttctcaactt 164077



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>emb|AL672073.8| Mouse DNA sequence from clone RP23-333P16 on chromosome X, complete
              sequence
          Length = 216812

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    caaaatccaaacaagcaaaa 144
              ||||||||||||||||||||
Sbjct: 202715 caaaatccaaacaagcaaaa 202696



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     atccatcaatggatagagca 285
               ||||||||||||||||||||
Sbjct: 4141123 atccatcaatggatagagca 4141104



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>emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-15E14 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158214

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aaagctccttttctcaactt 163
            ||||||||||||||||||||
Sbjct: 4639 aaagctccttttctcaactt 4658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,448,009
Number of Sequences: 3902068
Number of extensions: 2448009
Number of successful extensions: 49036
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48990
Number of HSP's gapped (non-prelim): 46
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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