ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast02h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCE2_ARATH (Q42472) Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2) 69 5e-12
2DCE_LYCES (P54767) Glutamate decarboxylase (EC 4.1.1.15) (GAD) (... 69 7e-12
3DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1) 64 1e-10
4DCE_PETHY (Q07346) Glutamate decarboxylase (EC 4.1.1.15) (GAD) 63 4e-10
5DCE_LACLA (Q9CG20) Glutamate decarboxylase (EC 4.1.1.15) (GAD) 32 0.74
6DCE_LACLC (O30418) Glutamate decarboxylase (EC 4.1.1.15) 32 0.97
7GCKR_HUMAN (Q14397) Glucokinase regulatory protein (Glucokinase ... 30 2.2
8EZY1_CHLRE (Q08354) Ezy-1 protein precursor 30 3.7
9EZY2_CHLRE (Q08355) Ezy-1 protein precursor 30 3.7
10MLO4_ARATH (O23693) MLO-like protein 4 (AtMlo4) 29 6.3
11HAIR_MOUSE (Q61645) Protein hairless 28 8.2
12HAIR_RAT (P97609) Protein hairless 28 8.2
13PAR3_CAEEL (Q17353) Partitioning defective protein 3 (Abnormal e... 28 8.2

>DCE2_ARATH (Q42472) Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)|
          Length = 494

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 31/42 (73%), Positives = 40/42 (95%)
 Frame = -1

Query: 452 AYTMPADAEHVAVLRIVIREDFNRSLAQRLLADINKVIGELD 327
           AYTMPADA+H+ VLR+VIREDF+R+LA+RL+ADI+KV+ ELD
Sbjct: 403 AYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELD 444



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>DCE_LYCES (P54767) Glutamate decarboxylase (EC 4.1.1.15) (GAD) (ERT D1)|
          Length = 502

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
 Frame = -1

Query: 452 AYTMPADAEHVAVLRIVIREDFNRSLAQRLLADINKVIGELDAH----AVHAIKLST--X 291
           AYTMP DAEH+AVLR+VIREDF+ SLA+RL++DI K++ ELD         A++++    
Sbjct: 405 AYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEV 464

Query: 290 XXXXXXXXXXXXXXATEAFKD-------LAGKKKAGVC 198
                           E  KD       +AGKK +GVC
Sbjct: 465 RDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502



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>DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1)|
          Length = 502

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 31/54 (57%), Positives = 42/54 (77%), Gaps = 3/54 (5%)
 Frame = -1

Query: 452 AYTMPADAEHVAVLRIVIREDFNRSLAQRLLADINKVIGELD---AHAVHAIKL 300
           AYTMP +A+H+ VLR+VIREDF+R+LA+RL+ DI KV+ ELD   +  +H I L
Sbjct: 404 AYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISL 457



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>DCE_PETHY (Q07346) Glutamate decarboxylase (EC 4.1.1.15) (GAD)|
          Length = 500

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = -1

Query: 452 AYTMPADAEHVAVLRIVIREDFNRSLAQRLLADINKVIGELD 327
           AYTMP +A+H+ VLR+VIREDF+R+LA+RL+ DI KV+ ELD
Sbjct: 404 AYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELD 445



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>DCE_LACLA (Q9CG20) Glutamate decarboxylase (EC 4.1.1.15) (GAD)|
          Length = 466

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 452 AYTMPADAEHVAVLRIVIREDFNRSLAQRLLADINKVIGELD-AHAVH 312
           AY +P + E+  + R+VIR DF  ++A   + D+ + I  L+ AH ++
Sbjct: 406 AYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEALNKAHILY 453



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>DCE_LACLC (O30418) Glutamate decarboxylase (EC 4.1.1.15)|
          Length = 466

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 452 AYTMPADAEHVAVLRIVIREDFNRSLAQRLLADINKVIGELD 327
           AY +P + E+  + R+VIR DF  ++A   + D+ + I  L+
Sbjct: 406 AYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIDALN 447



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>GCKR_HUMAN (Q14397) Glucokinase regulatory protein (Glucokinase regulator)|
          Length = 625

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 150 HVYVVSWSTIIILYVRTRIACILSFGS 70
           HVY+V W T+ I+ +   + CI +FG+
Sbjct: 329 HVYLVGWQTLGIIAIMDGVECIHTFGA 355



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>EZY1_CHLRE (Q08354) Ezy-1 protein precursor|
          Length = 453

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 183 ANKPSAYSGLLLPRQVLEG-LGGGVDRALTR 272
           A  P  Y  L L R +L G  GGGVD ALTR
Sbjct: 342 AMAPRQYRALALVRMILPGKTGGGVDGALTR 372



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>EZY2_CHLRE (Q08355) Ezy-1 protein precursor|
          Length = 456

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 183 ANKPSAYSGLLLPRQVLEG-LGGGVDRALTR 272
           A  P  Y  L L R +L G  GGGVD ALTR
Sbjct: 345 AMAPRQYRALALVRMILPGKTGGGVDGALTR 375



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>MLO4_ARATH (O23693) MLO-like protein 4 (AtMlo4)|
          Length = 573

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 175 LALSFITYSRLCCILEYHNYFVRTYADCLHSLFRLCW 65
           L L F+T   L     +H Y VRT  D  H +  + W
Sbjct: 244 LRLGFLTKHNLPFTYNFHMYMVRTMEDEFHGIVGISW 280



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>HAIR_MOUSE (Q61645) Protein hairless|
          Length = 1182

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 142 CCILEYHNYFVRTYADCLHSLFRLCWACGYVS 47
           CC   +H  F  T+  C H   RLC ACG ++
Sbjct: 594 CCSRCHHGLF-NTHWRCSHCSHRLCVACGRIA 624



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>HAIR_RAT (P97609) Protein hairless|
          Length = 1181

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 142 CCILEYHNYFVRTYADCLHSLFRLCWACGYVS 47
           CC   +H  F  T+  C H   RLC ACG ++
Sbjct: 593 CCSRCHHGLF-NTHWRCSHCSHRLCVACGRIA 623



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>PAR3_CAEEL (Q17353) Partitioning defective protein 3 (Abnormal embryonic|
            partitioning of cytoplasm protein 3)
          Length = 1379

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 40   KKQIHNHMP-SRAERENASNPRTYVQNNYGTPRYNIDVNT**RTEQASQQTSLQH 201
            K Q  N  P S  ++ + S PR+  Q NY +P   +D+ T   T  AS  T+ Q+
Sbjct: 886  KHQRQNSAPTSSTQKRSKSQPRSSSQRNYRSPMKLVDLPT---TAAASASTNSQN 937


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,894,716
Number of Sequences: 219361
Number of extensions: 826230
Number of successful extensions: 2421
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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