ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast02f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HRPH_PSESY (Q01723) Hypersensitivity response secretion protein ... 30 3.4
2SYG_STRCO (Q9L2H9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 29 4.4
3ITPA_MOUSE (Q9D892) Inosine triphosphate pyrophosphatase (EC 3.6... 29 5.8
4TBG_RETFI (P54405) Tubulin gamma chain (Gamma tubulin) 28 7.6

>HRPH_PSESY (Q01723) Hypersensitivity response secretion protein hrpH precursor|
          Length = 701

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 335 CGGNQSWRRW*LVEDRLWFQPGHPSDHYHHPRSPRVDKVEKQQR 204
           CGG   W          W QPG  S+ Y   R P++ K+ K+ R
Sbjct: 651 CGGR--WVIGVAAWPHAWLQPGEESEVYIAVRQPQISKMAKESR 692



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>SYG_STRCO (Q9L2H9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 460

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 5/23 (21%)
 Frame = -2

Query: 436 FFLRPNKDSKYRKY-----WNWY 383
           FF++P +D K+++Y     WNWY
Sbjct: 216 FFVKPGEDEKWQEYWMEQRWNWY 238



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>ITPA_MOUSE (Q9D892) Inosine triphosphate pyrophosphatase (EC 3.6.1.19)|
           (ITPase) (Inosine triphosphatase)
          Length = 198

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 164 NPNQA*LVCRRRRTAVVFPPCPHEDFEGDDSDQKDGQVETIADLPRVTSASNFDSH 331
           +P+Q  L+ R + +  +  P    DF  D   Q DG  +T A++P+  S  N  SH
Sbjct: 124 DPSQPVLLFRGQTSGQIVMPRGSRDFGWDPCFQPDGYEQTYAEMPK--SEKNTISH 177



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>TBG_RETFI (P54405) Tubulin gamma chain (Gamma tubulin)|
          Length = 478

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 418 KDSKYRKYWNWYHHWVGRLVLFFAAVNIVVGIKVGGAGNSWKIGY 284
           ++S+++  WN                N+ +  + GGAGN+W +GY
Sbjct: 78  QESEFKNLWN--------------PENVYIDSQGGGAGNNWAVGY 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,447,272
Number of Sequences: 219361
Number of extensions: 1130355
Number of successful extensions: 3226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3224
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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