Clone Information

BLAST Search Result

Clone Name	rbast02e07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_195345.1\| Oryza sativa (japonica cultivar-group) putative...	58	2e-05
2	gb\|AC093612.18\| Oryza sativa (japonica cultivar-group) chromosom...	58	2e-05
3	gb\|AC105377.12\| Oryza sativa chromosome 10 BAC OSJNBa0034E15 gen...	58	2e-05
4	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	2e-05
5	dbj\|AK100207.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	2e-05
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	58	2e-05
7	gb\|AY487780.1\| Natrix natrix isolate N040 NADH dehydrogenase sub...	44	0.36
8	gb\|AY870640.1\| Natrix natrix NADH dehydrogenase subunit 2 (ND2) ...	44	0.36
9	gb\|AY870622.1\| Natrix natrix NADH dehydrogenase subunit 2 (ND2) ...	44	0.36
10	gb\|AY870618.1\| Natrix natrix NADH dehydrogenase subunit 2 (ND2) ...	44	0.36
11	gb\|AY870617.1\| Natrix natrix voucher LSUMZ 41506 NADH dehydrogen...	44	0.36
12	gb\|AC109595.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.4
13	gb\|AC084384.1\| Mus musculus BAC clone RP23-24F24 from 15, comple...	42	1.4
14	gb\|AC108727.6\| Homo sapiens 3 BAC RP11-231L11 (Roswell Park Canc...	42	1.4
15	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
16	gb\|AC025750.10\| Homo sapiens BAC clone RP11-804P20 from 2, compl...	42	1.4
17	gb\|AC010203.14\| Homo sapiens 12 BAC RP11-175P13 (Roswell Park Ca...	42	1.4
18	dbj\|AK065891.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.4
19	gb\|AC107045.9\| Mus musculus chromosome 1, clone RP23-334J7, comp...	42	1.4
20	gb\|AY024212.1\| Oryza sativa microsatellite MRG6537 containing (T...	40	5.6
21	emb\|Z86062.1\|HS121G13 Human DNA sequence from clone RP1-121G13 o...	40	5.6
22	emb\|AL954721.4\| Zebrafish DNA sequence from clone BUSM1-119J18 i...	40	5.6
23	emb\|BX927227.11\| Zebrafish DNA sequence from clone CH211-127D13 ...	40	5.6
24	emb\|BX323858.12\| Zebrafish DNA sequence from clone DKEY-102F10 i...	40	5.6
25	gb\|AY118506.1\| Drosophila melanogaster LD10773 full insert cDNA	40	5.6
26	ref\|NM_136211.3\| Drosophila melanogaster CG9320-RA (CG9320), mRNA	40	5.6
27	gb\|AC150891.3\| Medicago truncatula chromosome 2 BAC clone mth2-7...	40	5.6
28	gb\|AC093047.1\| Drosophila melanogaster, chromosome 2L, region 38...	40	5.6
29	gb\|AC146538.2\| Gasterosteus aculeatus clone CH213-118G22, comple...	40	5.6
30	emb\|BX284646.4\| Zebrafish DNA sequence from clone CH211-49J11 in...	40	5.6
31	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
32	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
33	gb\|AC007467.4\|AC007467 Drosophila melanogaster, chromosome 2L, r...	40	5.6
34	gb\|AC018733.8\| Homo sapiens BAC clone RP11-337H6 from 2, complet...	40	5.6
35	dbj\|AP004150.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
36	dbj\|AP002836.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
37	dbj\|AP002816.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
38	ref\|XM_318627.2\| Anopheles gambiae str. PEST ENSANGP00000020973 ...	40	5.6
39	gb\|AY625898.1\| Pseudomonas aeruginosa phage F116, complete genome	40	5.6
40	emb\|BX293564.5\| Zebrafish DNA sequence from clone DKEYP-7F8 in l...	40	5.6
41	gb\|AE003668.5\| Drosophila melanogaster chromosome 2L, section 77...	40	5.6
42	emb\|AL135978.4\|CNS01DVN Human chromosome 14 DNA sequence BAC R-1...	40	5.6
43	gb\|AF025468.2\| Caenorhabditis elegans cosmid T27A1, complete seq...	40	5.6
44	gb\|AC099722.7\| Mus musculus chromosome 3, clone RP23-282E13, com...	40	5.6
45	emb\|CR847940.9\| Zebrafish DNA sequence from clone CH211-250O24 i...	40	5.6
46	emb\|CT033786.13\| Mouse DNA sequence from clone RP24-298F18 on ch...	40	5.6
47	emb\|AL935160.11\| Zebrafish DNA sequence from clone CH211-184C7 i...	40	5.6
48	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	5.6
49	emb\|AL954132.14\| Zebrafish DNA sequence from clone DKEY-32N7, co...	40	5.6
50	emb\|CR456684.10\| Zebrafish DNA sequence from clone DKEY-46I8 in ...	40	5.6
51	gb\|AC004759.1\|AC004759 Drosophila melanogaster DNA sequence (P1s...	40	5.6
52	gb\|AC102340.10\| Mus musculus chromosome 3, clone RP23-163J23, co...	40	5.6
53	gb\|AC144783.4\| Mus musculus BAC clone RP23-57A16 from 10, comple...	40	5.6
54	emb\|CR376825.16\| Zebrafish DNA sequence from clone CH211-136O20 ...	40	5.6
55	emb\|AL845426.9\| Mouse DNA sequence from clone RP23-289M11 on chr...	40	5.6
56	gb\|AC073434.42\| Mus musculus strain C57BL/6J chromosome 9 clone ...	40	5.6
57	gb\|AY066394.1\| Schmidtea mediterranea clone H.99.10h unknown mRN...	40	5.6
58	gb\|AC161259.2\| Mus musculus BAC clone RP23-465D18 from chromosom...	40	5.6
59	dbj\|D45246.1\|STMORFD Streptomyces griseus genes for orfD and afs...	40	5.6

>ref|NM_195345.1| Oryza sativa (japonica cultivar-group) putative acetyl transferase
            (OSJNBa0003P07.2), mRNA
          Length = 1458

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 292  ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 351
            |||| ||| |||| |||||||||||||||||||| || || ||||||||| |    ||| 
Sbjct: 1381 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 1322

                                                                        
Query: 352  tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 411
            |||||| | |||| ||||| || ||||| || |||||||| || || |  ||||| ||||
Sbjct: 1321 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 1262

                     
Query: 412  cgccggcga 420
            |||||||||
Sbjct: 1261 cgccggcga 1253

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>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0003P07, complete sequence
          Length = 175116

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                         
Query: 292   ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 351
             |||| ||| |||| |||||||||||||||||||| || || ||||||||| |    ||| 
Sbjct: 12691 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 12632

                                                                         
Query: 352   tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 411
             |||||| | |||| ||||| || ||||| || |||||||| || || |  ||||| ||||
Sbjct: 12631 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 12572

                      
Query: 412   cgccggcga 420
             |||||||||
Sbjct: 12571 cgccggcga 12563

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>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete
             sequence
          Length = 100285

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                         
Query: 292   ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 351
             |||| ||| |||| |||||||||||||||||||| || || ||||||||| |    ||| 
Sbjct: 92396 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 92337

                                                                         
Query: 352   tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 411
             |||||| | |||| ||||| || ||||| || |||||||| || || |  ||||| ||||
Sbjct: 92336 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 92277

                      
Query: 412   cgccggcga 420
             |||||||||
Sbjct: 92276 cgccggcga 92268

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                           
Query: 292     ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 351
               |||| ||| |||| |||||||||||||||||||| || || ||||||||| |    ||| 
Sbjct: 6294838 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 6294779

                                                                           
Query: 352     tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 411
               |||||| | |||| ||||| || ||||| || |||||||| || || |  ||||| ||||
Sbjct: 6294778 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 6294719

                        
Query: 412     cgccggcga 420
               |||||||||
Sbjct: 6294718 cgccggcga 6294710

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>dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A21, full
            insert sequence
          Length = 2209

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 292  ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 351
            |||| ||| |||| |||||||||||||||||||| || || ||||||||| |    ||| 
Sbjct: 1805 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 1746

                                                                        
Query: 352  tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 411
            |||||| | |||| ||||| || ||||| || |||||||| || || |  ||||| ||||
Sbjct: 1745 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 1686

                     
Query: 412  cgccggcga 420
            |||||||||
Sbjct: 1685 cgccggcga 1677

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                           
Query: 292     ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 351
               |||| ||| |||| |||||||||||||||||||| || || ||||||||| |    ||| 
Sbjct: 6296424 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 6296365

                                                                           
Query: 352     tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 411
               |||||| | |||| ||||| || ||||| || |||||||| || || |  ||||| ||||
Sbjct: 6296364 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 6296305

                        
Query: 412     cgccggcga 420
               |||||||||
Sbjct: 6296304 cgccggcga 6296296

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>gb|AY487780.1| Natrix natrix isolate N040 NADH dehydrogenase subunit 2 (ND2) gene,
           complete cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tcgttctaaataaaataatttt 51
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812

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>gb|AY870640.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tcgttctaaataaaataatttt 51
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812

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>gb|AY870622.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tcgttctaaataaaataatttt 51
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812

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>gb|AY870618.1| Natrix natrix NADH dehydrogenase subunit 2 (ND2) gene, complete
           cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tcgttctaaataaaataatttt 51
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812

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>gb|AY870617.1| Natrix natrix voucher LSUMZ 41506 NADH dehydrogenase subunit 2
           (ND2) gene, complete cds; mitochondrial
          Length = 1029

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 30  tcgttctaaataaaataatttt 51
           ||||||||||||||||||||||
Sbjct: 791 tcgttctaaataaaataatttt 812

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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   cggcagcagcatcgacaccac 325
             |||||||||||||||||||||
Sbjct: 58470 cggcagcagcatcgacaccac 58450

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>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence
          Length = 208833

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 100   acatacatatatgtgcgtgtgacat 124
             ||||||||||||||| |||||||||
Sbjct: 27465 acatacatatatgtgtgtgtgacat 27441

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>gb|AC108727.6| Homo sapiens 3 BAC RP11-231L11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155898

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    aaataaaataattttgacaag 57
             |||||||||||||||||||||
Sbjct: 91393 aaataaaataattttgacaag 91373

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 305      cggcagcagcatcgacaccac 325
                |||||||||||||||||||||
Sbjct: 20636430 cggcagcagcatcgacaccac 20636410

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>gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, complete sequence
          Length = 151367

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 36     taaataaaataattttgacaa 56
              |||||||||||||||||||||
Sbjct: 102143 taaataaaataattttgacaa 102163

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>gb|AC010203.14| Homo sapiens 12 BAC RP11-175P13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167569

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 100    acatacatatatgtgcgtgtg 120
              |||||||||||||||||||||
Sbjct: 149105 acatacatatatgtgcgtgtg 149085

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>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full
            insert sequence
          Length = 1975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 305  cggcagcagcatcgacaccac 325
            |||||||||||||||||||||
Sbjct: 1368 cggcagcagcatcgacaccac 1348

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>gb|AC107045.9| Mus musculus chromosome 1, clone RP23-334J7, complete sequence
          Length = 222700

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    aaataaaataattttgacaag 57
             |||||||||||||||||||||
Sbjct: 94542 aaataaaataattttgacaag 94522

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>gb|AY024212.1| Oryza sativa microsatellite MRG6537 containing (TATG)X12, closest
           to marker C668, genomic sequence
          Length = 248

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 100 acatacatatatgtgcgtgtgaca 123
           ||||||||||||||| ||||||||
Sbjct: 109 acatacatatatgtgtgtgtgaca 86

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>emb|Z86062.1|HS121G13 Human DNA sequence from clone RP1-121G13 on chromosome 6q16 Contains
             the 3' end of the RNAH gene for an RNA helicase, the 5'
             end of the SIM1 gene for single-minded homolog 1
             (Drosophila), an RP42 homolog pseudogene a novel gene and
             three CpG islands, complete sequence
          Length = 176932

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    gttctaaataaaataatttt 51
             ||||||||||||||||||||
Sbjct: 34599 gttctaaataaaataatttt 34618

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>emb|AL954721.4| Zebrafish DNA sequence from clone BUSM1-119J18 in linkage group 20
             Contains a novel gene for a protein with helix-loop-helix
             DNA-binding domain, a novel gene similar to rat KIDINS220
             (kinase D-interacting substance of 220 kDa) and two CpG
             islands, complete sequence
          Length = 95798

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    taaataaaataattttgaca 55
             ||||||||||||||||||||
Sbjct: 17529 taaataaaataattttgaca 17548

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>emb|BX927227.11| Zebrafish DNA sequence from clone CH211-127D13 in linkage group 5,
              complete sequence
          Length = 135384

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ctaaataaaataattttgac 54
              ||||||||||||||||||||
Sbjct: 103536 ctaaataaaataattttgac 103517

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>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14,
             complete sequence
          Length = 184463

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tcgttctaaataaaataatt 49
             ||||||||||||||||||||
Sbjct: 11480 tcgttctaaataaaataatt 11499

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>gb|AY118506.1| Drosophila melanogaster LD10773 full insert cDNA
          Length = 1963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  gcagcagcatcgacaccacg 326
            ||||||||||||||||||||
Sbjct: 1044 gcagcagcatcgacaccacg 1063

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>ref|NM_136211.3| Drosophila melanogaster CG9320-RA (CG9320), mRNA
          Length = 2039

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  gcagcagcatcgacaccacg 326
            ||||||||||||||||||||
Sbjct: 1156 gcagcagcatcgacaccacg 1175

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>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence
          Length = 142579

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    cacaaccaaacttcaaatta 90
             ||||||||||||||||||||
Sbjct: 45116 cacaaccaaacttcaaatta 45135

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>gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38D-38E, BAC clone
              BACR31P14, complete sequence
          Length = 156806

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    gcagcagcatcgacaccacg 326
              ||||||||||||||||||||
Sbjct: 153051 gcagcagcatcgacaccacg 153070

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>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gctggcgaagtttctgtaac 199
             ||||||||||||||||||||
Sbjct: 94946 gctggcgaagtttctgtaac 94927

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>emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in linkage group 5,
             complete sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ctaaataaaataattttgac 54
             ||||||||||||||||||||
Sbjct: 82382 ctaaataaaataattttgac 82401

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      ttgcacaaccaaacttcaaa 87
               ||||||||||||||||||||
Sbjct: 1631985 ttgcacaaccaaacttcaaa 1632004

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 100     acatacatatatgtgcgtgtgaca 123
               ||||||||||||||| ||||||||
Sbjct: 4660182 acatacatatatgtgtgtgtgaca 4660159

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>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone
             BACR07D17, complete sequence
          Length = 173422

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   gcagcagcatcgacaccacg 326
             ||||||||||||||||||||
Sbjct: 23653 gcagcagcatcgacaccacg 23672

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>gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complete sequence
          Length = 163117

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aattttgacaaggaggagta 65
             ||||||||||||||||||||
Sbjct: 72779 aattttgacaaggaggagta 72760

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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ttgcacaaccaaacttcaaa 87
             ||||||||||||||||||||
Sbjct: 69088 ttgcacaaccaaacttcaaa 69107

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>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512G09
          Length = 146921

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   acatacatatatgtgcgtgtgaca 123
             ||||||||||||||| ||||||||
Sbjct: 20427 acatacatatatgtgtgtgtgaca 20404

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>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0695A04
          Length = 158133

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   acatacatatatgtgcgtgtgaca 123
             ||||||||||||||| ||||||||
Sbjct: 67398 acatacatatatgtgtgtgtgaca 67375

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>ref|XM_318627.2| Anopheles gambiae str. PEST ENSANGP00000020973 (ENSANGG00000018484),
            partial mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  ctcctccgtaaacacgtccatcgc 298
            ||||||||| ||||||||||||||
Sbjct: 1044 ctcctccgtcaacacgtccatcgc 1021

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>gb|AY625898.1| Pseudomonas aeruginosa phage F116, complete genome
          Length = 65195

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   catcgacaccacggtggaga 333
             ||||||||||||||||||||
Sbjct: 44226 catcgacaccacggtggaga 44245

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>emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in linkage group 20,
             complete sequence
          Length = 145495

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    taaataaaataattttgaca 55
             ||||||||||||||||||||
Sbjct: 71425 taaataaaataattttgaca 71444

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>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete
             sequence
          Length = 270158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   gcagcagcatcgacaccacg 326
             ||||||||||||||||||||
Sbjct: 13467 gcagcagcatcgacaccacg 13486

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>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aaacatacatatatgtgcgt 117
             ||||||||||||||||||||
Sbjct: 45033 aaacatacatatatgtgcgt 45052

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>gb|AF025468.2| Caenorhabditis elegans cosmid T27A1, complete sequence
          Length = 36075

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tctaaataaaataattttga 53
             ||||||||||||||||||||
Sbjct: 26222 tctaaataaaataattttga 26203

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>gb|AC099722.7| Mus musculus chromosome 3, clone RP23-282E13, complete sequence
          Length = 233425

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    atacatatatgtgcgtgtga 121
              ||||||||||||||||||||
Sbjct: 137141 atacatatatgtgcgtgtga 137160

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>emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 in linkage group 11,
             complete sequence
          Length = 102840

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tcgttctaaataaaataatt 49
             ||||||||||||||||||||
Sbjct: 52375 tcgttctaaataaaataatt 52394

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>emb|CT033786.13| Mouse DNA sequence from clone RP24-298F18 on chromosome 14, complete
              sequence
          Length = 185421

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    catacatatatgtgcgtgtg 120
              ||||||||||||||||||||
Sbjct: 152102 catacatatatgtgcgtgtg 152083

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>emb|AL935160.11| Zebrafish DNA sequence from clone CH211-184C7 in linkage group 12,
             complete sequence
          Length = 140401

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aataaaataattttgacaag 57
             ||||||||||||||||||||
Sbjct: 46293 aataaaataattttgacaag 46274

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 310     gcagcatcgacaccacggtg 329
               ||||||||||||||||||||
Sbjct: 4460354 gcagcatcgacaccacggtg 4460373

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>emb|AL954132.14| Zebrafish DNA sequence from clone DKEY-32N7, complete sequence
          Length = 197745

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     gagtacattgcacaaccaaa 80
              ||||||||||||||||||||
Sbjct: 194239 gagtacattgcacaaccaaa 194258

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>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12, complete
              sequence
          Length = 262809

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     aataaaataattttgacaag 57
              ||||||||||||||||||||
Sbjct: 184937 aataaaataattttgacaag 184956

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>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582
             (D85)), complete sequence
          Length = 142799

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gcagcagcatcgacaccacg 326
             ||||||||||||||||||||
Sbjct: 65882 gcagcagcatcgacaccacg 65863

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>gb|AC102340.10| Mus musculus chromosome 3, clone RP23-163J23, complete sequence
          Length = 199087

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 atacatatatgtgcgtgtga 121
           ||||||||||||||||||||
Sbjct: 146 atacatatatgtgcgtgtga 165

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>gb|AC144783.4| Mus musculus BAC clone RP23-57A16 from 10, complete sequence
          Length = 246132

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    acatacatatatgtgcgtgt 119
              ||||||||||||||||||||
Sbjct: 154000 acatacatatatgtgcgtgt 154019

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>emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 in linkage group 14,
              complete sequence
          Length = 176973

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     tcgttctaaataaaataatt 49
              ||||||||||||||||||||
Sbjct: 148175 tcgttctaaataaaataatt 148194

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>emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chromosome 2, complete
              sequence
          Length = 181434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     aataattttgacaaggagga 62
              ||||||||||||||||||||
Sbjct: 129489 aataattttgacaaggagga 129508

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>gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete
            sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 100  acatacatatatgtgcgtgt 119
            ||||||||||||||||||||
Sbjct: 3268 acatacatatatgtgcgtgt 3287

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>gb|AY066394.1| Schmidtea mediterranea clone H.99.10h unknown mRNA sequence
          Length = 649

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  tctaaataaaataattttga 53
           ||||||||||||||||||||
Sbjct: 502 tctaaataaaataattttga 521

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>gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosome 9, complete sequence
          Length = 175659

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   acatacatatatgtgcgtgt 119
             ||||||||||||||||||||
Sbjct: 47751 acatacatatatgtgcgtgt 47732

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>dbj|D45246.1|STMORFD Streptomyces griseus genes for orfD and afsKG (protein Ser/Thr
            kinase), complete cds
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  cggcagcagcatcgacacca 324
            ||||||||||||||||||||
Sbjct: 5421 cggcagcagcatcgacacca 5440


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,703,821
Number of Sequences: 3902068
Number of extensions: 4703821
Number of successful extensions: 102659
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102342
Number of HSP's gapped (non-prelim): 311
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result