ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast02e03 |
|---|---|
| Clone Library Name | barley_pub |
>NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 255 Score = 159 bits (401), Expect = 4e-39 Identities = 71/92 (77%), Positives = 79/92 (85%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 FSVGEMECMGCCVNAPMI VADYS GS+GYTYNY+ED+TP++VVE+VE LR+GE PP GT Sbjct: 164 FSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGT 223 Query: 264 QNPERKNCGPARGMTTLLGEPKPPPCRDLDAC 169 QNP+R CGP G TLLGEPKPP RDLDAC Sbjct: 224 QNPKRIKCGPEGGNKTLLGEPKPPQFRDLDAC 255
>NUHM_BOVIN (P04394) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Polypeptide II) Length = 249 Score = 71.6 bits (174), Expect = 8e-13 Identities = 36/84 (42%), Positives = 53/84 (63%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 F++ E+EC+G CVNAPM+ + D NYYEDLTPK + E+++ L+ G+ P G Sbjct: 169 FTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAGKIPKPGP 218 Query: 264 QNPERKNCGPARGMTTLLGEPKPP 193 ++ R +C PA G+T+L PK P Sbjct: 219 RS-GRFSCEPAGGLTSLTEPPKGP 241
>NUHM_MOUSE (Q9D6J6) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 248 Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/84 (42%), Positives = 52/84 (61%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 F++ E+EC+G CVNAPM+ + D NYYEDLTPK + E+++ L+ G+ P G Sbjct: 168 FTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIIDELKAGKVPKPGP 217 Query: 264 QNPERKNCGPARGMTTLLGEPKPP 193 ++ R C PA G+T+L PK P Sbjct: 218 RS-GRFCCEPAGGLTSLTEPPKGP 240
>NUHM_RAT (P19234) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 248 Score = 69.7 bits (169), Expect = 3e-12 Identities = 36/84 (42%), Positives = 52/84 (61%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 F++ E+EC+G CVNAPM+ + D +YYEDLTPK + E+++ LR G+ P G Sbjct: 168 FTLIEVECLGACVNAPMVQIND----------DYYEDLTPKDIEEIIDELRAGKVPKPGP 217 Query: 264 QNPERKNCGPARGMTTLLGEPKPP 193 ++ R C PA G+T+L PK P Sbjct: 218 RS-GRFCCEPAGGLTSLTEPPKGP 240
>NUHM_HUMAN (P19404) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 249 Score = 68.6 bits (166), Expect = 7e-12 Identities = 35/84 (41%), Positives = 52/84 (61%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 F++ E+EC+G CVNAPM+ + D NYYEDLT K + E+++ L+ G+ P G Sbjct: 169 FTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIIDELKAGKIPKPGP 218 Query: 264 QNPERKNCGPARGMTTLLGEPKPP 193 ++ R +C PA G+T+L PK P Sbjct: 219 RS-GRFSCEPAGGLTSLTEPPKGP 241
>NUHM_CAEEL (Q20719) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 239 Score = 56.6 bits (135), Expect = 3e-08 Identities = 32/84 (38%), Positives = 47/84 (55%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 F++ E+EC+G CVNAPMI + D +Y+EDLTPK V E+++ L+ G P G Sbjct: 158 FTLAEVECLGACVNAPMIQIND----------DYFEDLTPKDVNEILDDLKAGRKPAAGP 207 Query: 264 QNPERKNCGPARGMTTLLGEPKPP 193 ++ R P +T+L P P Sbjct: 208 RS-GRLAAEPFGELTSLKETPPGP 230
>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 263 Score = 55.1 bits (131), Expect = 8e-08 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGET----- 280 F+ E+EC+G C NAPM+ + D +Y+EDLTP+ + +++ L+ T Sbjct: 179 FTFIEVECLGACANAPMVQIND----------DYFEDLTPETIKQVLSALKESVTDVSKA 228 Query: 279 PPRGTQNPERKNCGPARGMTTLLGEPKPP 193 P G Q+ R+ C A G+T+L EP P Sbjct: 229 PQPGPQS-GRQTCENAAGLTSLTSEPYGP 256
>NQO2_PARDE (P29914) NADH-quinone oxidoreductase chain 2 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 239 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/62 (40%), Positives = 34/62 (54%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGT 265 FS E+EC+G C NAPM + G D +YEDLT +++ L++ GE P G Sbjct: 130 FSWEEVECLGACTNAPMAQI-----GKD-----FYEDLTVEKLAALIDRFAAGEVPVPGP 179 Query: 264 QN 259 QN Sbjct: 180 QN 181
>NUOE1_RHIME (P56909) NADH-quinone oxidoreductase chain E 1 (EC 1.6.99.5) (NADH| dehydrogenase I, chain E 1) (NDH-1, chain E 1) Length = 275 Score = 43.1 bits (100), Expect = 3e-04 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Frame = -3 Query: 432 EMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRG---ETPPRGTQ 262 E+EC G CVNAPM+ + + +EDLTP+R+ E+++ G E P G Q Sbjct: 137 EVECQGACVNAPMVMIFK----------DTFEDLTPERLEEIIDRFEAGKGSEVVP-GPQ 185 Query: 261 NPERKNCGPARGMTTLLGEPKP 196 +R P G+TTL P+P Sbjct: 186 -IDRVYSAPIGGLTTLQA-PEP 205
>NUOE_RICCN (Q92ID9) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 167 Score = 43.1 bits (100), Expect = 3e-04 Identities = 18/51 (35%), Positives = 33/51 (64%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLR 292 F++ E+EC+G CVNAP++ + D +YYEDLT ++ ++++ L+ Sbjct: 125 FTLSEIECLGACVNAPVVQIND----------DYYEDLTQDKMGKIIDKLQ 165
>NUOE_RICPR (Q9ZDH5) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 177 Score = 42.0 bits (97), Expect = 7e-04 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVE 301 F++ E+EC+G CVNAP++ + D +YYEDL ++ +L+E Sbjct: 127 FTLSEIECLGACVNAPVVQIND----------DYYEDLNEAKMEKLIE 164
>CAAL_PSEAE (Q9I1T4) Carboxylate-amine ligase PA2181 (EC 6.3.-.-)| Length = 377 Score = 32.3 bits (72), Expect = 0.55 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +3 Query: 297 AFQRVQQLALE*GLRNNCMCNHLNPWNSQPQQSWERSHSNPCIPFHR 437 A QR+ LA++ GLR+ C+ H P W R+ SNP F R Sbjct: 77 ARQRLAHLAMDFGLRSLCVGTH-------PFADWRRARSNPAAHFAR 116
>NQO2_THET8 (Q56221) NADH-quinone oxidoreductase subunit 2 (EC 1.6.99.5) (NADH| dehydrogenase I chain 2) (NDH-1 subunit 2) Length = 180 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGE 283 FSV ++EC+G C AP+I V D Y E +T R+ L+ LR G+ Sbjct: 116 FSVQKVECLGSCHTAPVIQVNDEP---------YVECVTRARLEALLAGLRAGK 160
>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6684 Score = 31.6 bits (70), Expect = 0.93 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Frame = -3 Query: 426 ECM-GCCVNAPMIAVADYSKGSDGYTYN-------YYEDLTPKRVVELVEMLRRGETPPR 271 EC G C+NA + V +Y K S GY N YYE L+ + L + +R P Sbjct: 4476 ECYDGGCINAREVVVTNYDK-SAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTM 4534 Query: 270 GTQNPERKNCGPARGMT 220 N + G AR T Sbjct: 4535 TQMNLKYAISGKARART 4551
>NUOE2_RHIME (P56910) NADH-quinone oxidoreductase chain E 2 (EC 1.6.99.5) (NADH| dehydrogenase I, chain E 2) (NDH-1, chain E 2) Length = 168 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 444 FSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGE 283 F++ +EC+G C AP++ V D +Y+ +L R+ L+E R E Sbjct: 111 FTLSTVECLGACEMAPVMQVGD----------DYHGNLDAARLDALLESFRAAE 154
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Frame = +2 Query: 185 LHGGGF-GSPSKVVIPLAGPQFFR-----SGFWVPRGGVSP 289 ++GGGF GSPS+ P P SG W P GG+SP Sbjct: 1489 IYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSP 1529
>NUOE_MYCTU (P65573) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 252 Score = 29.3 bits (64), Expect = 4.6 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = -3 Query: 429 MECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGTQNPER 250 +EC C AP++ V + ++++ TP+ ELV+ L R +TP T+ Sbjct: 153 IECNAACDYAPVVMV----------NWEFFDNQTPESARELVDSL-RSDTPKAPTRGAPL 201 Query: 249 KNCGPARGMTTLLGEPKPPP 190 CG + L G P P Sbjct: 202 --CGFRQTSRILAGLPDQRP 219
>NUOE_MYCBO (P65574) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH| dehydrogenase I, chain E) (NDH-1, chain E) Length = 252 Score = 29.3 bits (64), Expect = 4.6 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = -3 Query: 429 MECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLRRGETPPRGTQNPER 250 +EC C AP++ V + ++++ TP+ ELV+ L R +TP T+ Sbjct: 153 IECNAACDYAPVVMV----------NWEFFDNQTPESARELVDSL-RSDTPKAPTRGAPL 201 Query: 249 KNCGPARGMTTLLGEPKPPP 190 CG + L G P P Sbjct: 202 --CGFRQTSRILAGLPDQRP 219
>MMP19_HUMAN (Q99542) Matrix metalloproteinase-19 precursor (EC 3.4.24.-)| (MMP-19) (Matrix metalloproteinase RASI) (MMP-18) Length = 508 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 102 VVRDIQCEPTYLCACLQLKSKPSRHPDPCMGEVLALL 212 V+RD + E T L + ++PS PDPC E+ A++ Sbjct: 261 VIRDEEEEETELPTVPPVPTEPSPMPDPCSSELDAMM 297
>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) (PPAR-alpha-interacting complex protein 128) (PRIC128) Length = 1135 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Frame = -3 Query: 351 YNYYEDLTPKRVVELVEMLRRGETPPR--------GTQNPERKNC 241 + Y+ + KR+ E+ M+R GETP + G+++P ++ C Sbjct: 1070 FYYFSNSPSKRLREINSMIRTGETPTKKRGILLDDGSESPAKRIC 1114
>RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) Length = 1135 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Frame = -3 Query: 351 YNYYEDLTPKRVVELVEMLRRGETPPR--------GTQNPERKNC 241 + Y+ + KR+ E+ M+R GETP + G+++P ++ C Sbjct: 1070 FYYFSNSPSKRLREINSMIRTGETPTKKRGILLDDGSESPAKRIC 1114
>HIS8_BACTN (Q8ABA8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 346 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +3 Query: 168 SRHPDPCMGEVLALLARWSSL*QGRSFSALGSGCHEGVFLLFSAF 302 +R+PDP E+ LL++ + F LG+G E + L+F AF Sbjct: 46 NRYPDPMQWELKTLLSKIKKVSPQHIF--LGNGSDEAIDLVFRAF 88
>RS23A_ARATH (Q9SF35) 40S ribosomal protein S23-1 (S12)| Length = 142 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 11 RKLRQQQRSNRLSIVGHKKALRTTEIKSPIGCSRH 115 RKL+Q + + R + +KK+ R E K P CS H Sbjct: 11 RKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSH 45
>PHLC2_CLOPE (Q9RF12) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Alpha-toxin) (Hemolysin) (Lecithinase) Length = 398 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Frame = -3 Query: 402 APMIAVADYSKGSDGYTYNYYEDLTP-------KRVVELVEMLRRGETPPRGTQN 259 A +A+A+ KG+ GY Y + D++ K V ELV + G GT + Sbjct: 248 AAKVALANSQKGTSGYIYRFLHDVSDGKDSSANKNVNELVAYITTGGEKYAGTDD 302
>RBL2_HUMAN (Q08999) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) Length = 1139 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Frame = -3 Query: 351 YNYYEDLTPKRVVELVEMLRRGETPPR--------GTQNPERKNC 241 + Y+ + KR+ E+ M+R GETP + G+++P ++ C Sbjct: 1074 FYYFSNSPSKRLREINSMIRTGETPTKKRGILLEDGSESPAKRIC 1118
>PLD_CORPS (P20626) Phospholipase D precursor (EC 3.1.4.4) (PLD) (Choline| phosphatase) Length = 307 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +1 Query: 91 IAYRLFATYNASQLICVLACNSKANLAGIQIPAWGRFWLS*QGGHPSSRAA 243 IA+R+ T + + AN I AWGR W + G P+S A Sbjct: 42 IAHRVLTTQGVDDAVAI-----GANALEIDFTAWGRGWWADHDGIPTSAGA 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,012,475 Number of Sequences: 219361 Number of extensions: 1452642 Number of successful extensions: 4055 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4035 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
