Clone Information

BLAST Search Result

Clone Name	rbast02e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT016329.1\| Zea mays clone Contig162 mRNA sequence	280	4e-72
2	gb\|AY106442.1\| Zea mays PCO078493 mRNA sequence	280	4e-72
3	dbj\|AK099007.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	274	2e-70
4	dbj\|AK061566.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	274	2e-70
5	dbj\|AK100226.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	266	6e-68
6	ref\|XM_475674.1\| Oryza sativa (japonica cultivar-group), predic...	256	5e-65
7	gb\|DQ175979.1\| Hordeum vulgare subsp. vulgare clone 41-30A-RB fl...	159	9e-36
8	gb\|AC130601.2\| Oryza sativa (japonica cultivar-group) chromosome...	111	2e-21
9	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
10	emb\|BX828161.1\|CNS0A2Z8 Arabidopsis thaliana Full-length cDNA Co...	70	7e-09
11	ref\|NM_116492.2\| Arabidopsis thaliana NADH dehydrogenase (ubiqui...	62	2e-06
12	gb\|AY052326.1\| Arabidopsis thaliana AT4g02580/T10P11_14 mRNA, co...	62	2e-06
13	emb\|BX826545.1\|CNS0A3A1 Arabidopsis thaliana Full-length cDNA Co...	62	2e-06
14	emb\|BX826476.1\|CNS0A380 Arabidopsis thaliana Full-length cDNA Co...	62	2e-06
15	gb\|BT001140.1\| Arabidopsis thaliana At4g02580/T10P11_14 mRNA, co...	62	2e-06
16	gb\|AC002330.1\| Arabidopsis thaliana BAC T10P11 from chromosome I...	44	0.38
17	emb\|AL161494.2\|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c...	44	0.38
18	gb\|AC155294.2\| Mus musculus BAC clone RP24-328F24 from chromosom...	42	1.5
19	gb\|U50066.1\| Caenorhabditis elegans cosmid T14A8, complete sequence	40	6.0
20	emb\|AL513082.10\| Human DNA sequence from clone RP11-229N15 on ch...	40	6.0
21	emb\|AL359375.16\| Human DNA sequence from clone RP11-93K18 on chr...	40	6.0
22	gb\|AC079269.8\| Homo sapiens chromosome 10 clone RP11-379L21, com...	40	6.0
23	gb\|AF238375.3\| Homo sapiens chromosome 21 clone BAC 49B5 map 21q...	40	6.0
24	emb\|CR389787.1\| Gallus gallus finished cDNA, clone ChEST713n9	40	6.0
25	gb\|AC051624.6\|AC051624 Genomic Sequence for Oryza sativa, Nippon...	40	6.0
26	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
27	dbj\|BS000057.1\| Pan troglodytes chromosome 22 clone:RP43-020J03,...	40	6.0
28	dbj\|AP001677.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.0
29	gb\|AC116556.14\| Mus musculus strain C57BL/6J chromosome 8 clone ...	40	6.0
30	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
31	gb\|AC140919.2\| Mus musculus BAC clone RP24-510L10 from 1, comple...	40	6.0
32	dbj\|AP001256.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	6.0

>gb|BT016329.1| Zea mays clone Contig162 mRNA sequence
          Length = 1199

 Score =  280 bits (141), Expect = 4e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                       
Query: 158 aagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaag 217
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||
Sbjct: 909 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctccgtgcaag 850

                                                                       
Query: 218 gtggtcatccctctagcagggccgcagtttttccgctctgggttctgggtgccacgaggg 277
           |||||  |||| |  |||||||| |||||||| |||||||||| ||| || || ||||||
Sbjct: 849 gtggtgttccccccggcagggccacagttttttcgctctgggtgctgtgtacctcgaggg 790

                                                                       
Query: 278 ggtgtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtct 337
           |||||||| |||||||| ||||| ||||| |  ||||||||||| |||||||||||||| 
Sbjct: 789 ggtgtttcacctcttctaagcatctcaacaatctcaacaactcgttttggagtgaggtcc 730

                                                                       
Query: 338 tcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatg 397
           || || || || ||||||||||| ||||| || || || |||||||||||||||||||| 
Sbjct: 729 tcatagtagttatatgtgtaaccctctgagcctttcgagtagtcagccacagcaatcata 670

                                                            
Query: 398 ggagcgttcacacagcaacccatgcattccatttcaccgacagaaaata 446
           ||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 669 ggagcattcacacagcaacccatgcactccatttctccaacagaaaata 621

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>gb|AY106442.1| Zea mays PCO078493 mRNA sequence
          Length = 1289

 Score =  280 bits (141), Expect = 4e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                       
Query: 158 aagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaag 217
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||
Sbjct: 917 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctccgtgcaag 858

                                                                       
Query: 218 gtggtcatccctctagcagggccgcagtttttccgctctgggttctgggtgccacgaggg 277
           |||||  |||| |  |||||||| |||||||| |||||||||| ||| || || ||||||
Sbjct: 857 gtggtgttccccccggcagggccacagttttttcgctctgggtgctgtgtacctcgaggg 798

                                                                       
Query: 278 ggtgtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtct 337
           |||||||| |||||||| ||||| ||||| |  ||||||||||| |||||||||||||| 
Sbjct: 797 ggtgtttcacctcttctaagcatctcaacaatctcaacaactcgttttggagtgaggtcc 738

                                                                       
Query: 338 tcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatg 397
           || || || || ||||||||||| ||||| || || || |||||||||||||||||||| 
Sbjct: 737 tcatagtagttatatgtgtaaccctctgagcctttcgagtagtcagccacagcaatcata 678

                                                            
Query: 398 ggagcgttcacacagcaacccatgcattccatttcaccgacagaaaata 446
           ||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 677 ggagcattcacacagcaacccatgcactccatttctccaacagaaaata 629

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>dbj|AK099007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114B12, full
           insert sequence
          Length = 1147

 Score =  274 bits (138), Expect = 2e-70
 Identities = 252/290 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 216
           ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 887 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 828

                                                                       
Query: 217 ggtggtcatccctctagcagggccgcagtttttccgctctgggttctgggtgccacgagg 276
           ||||||  |||||| ||||||||| |||||||||||||||||||  || ||||| |||||
Sbjct: 827 ggtggtattccctccagcagggccacagtttttccgctctgggtgttgtgtgccgcgagg 768

                                                                       
Query: 277 gggtgtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtc 336
            || |||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||
Sbjct: 767 aggggtttctcctcttttcagcatctcgacgatctcaacaactcgtttaggagtgaggtc 708

                                                                       
Query: 337 ttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcat 396
            || ||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 707 ctcataatagttgtatgtgtaaccctctgaacctttagaataatcggccacagcaatcat 648

                                                             
Query: 397 gggagcgttcacacagcaacccatgcattccatttcaccgacagaaaata 446
           |||||| ||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 647 gggagcattcacacagcagcccatgcactccatttctccaacagaaaata 598

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>dbj|AK061566.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E10, full
           insert sequence
          Length = 1219

 Score =  274 bits (138), Expect = 2e-70
 Identities = 252/290 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 216
           ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 890 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 831

                                                                       
Query: 217 ggtggtcatccctctagcagggccgcagtttttccgctctgggttctgggtgccacgagg 276
           ||||||  |||||| ||||||||| |||||||||||||||||||  || ||||| |||||
Sbjct: 830 ggtggtattccctccagcagggccacagtttttccgctctgggtgttgtgtgccgcgagg 771

                                                                       
Query: 277 gggtgtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtc 336
            || |||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||
Sbjct: 770 aggggtttctcctcttttcagcatctcgacgatctcaacaactcgtttaggagtgaggtc 711

                                                                       
Query: 337 ttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcat 396
            || ||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 710 ctcataatagttgtatgtgtaaccctctgaacctttagaataatcggccacagcaatcat 651

                                                             
Query: 397 gggagcgttcacacagcaacccatgcattccatttcaccgacagaaaata 446
           |||||| ||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 650 gggagcattcacacagcagcccatgcactccatttctccaacagaaaata 601

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>dbj|AK100226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048E09, full
           insert sequence
          Length = 1120

 Score =  266 bits (134), Expect = 6e-68
 Identities = 251/290 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 216
           ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 885 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 826

                                                                       
Query: 217 ggtggtcatccctctagcagggccgcagtttttccgctctgggttctgggtgccacgagg 276
           ||||||  ||| || ||||||||| |||||||||||||||||||  || ||||| |||||
Sbjct: 825 ggtggtattccttccagcagggccacagtttttccgctctgggtgttgtgtgccgcgagg 766

                                                                       
Query: 277 gggtgtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtc 336
            || |||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||
Sbjct: 765 aggggtttctcctcttttcagcatctcgacgatctcaacaactcgtttaggagtgaggtc 706

                                                                       
Query: 337 ttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcat 396
            || ||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 705 ctcataatagttgtatgtgtaaccctctgaacctttagaataatcggccacagcaatcat 646

                                                             
Query: 397 gggagcgttcacacagcaacccatgcattccatttcaccgacagaaaata 446
           |||||| ||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 645 gggagcattcacacagcagcccatgcactccatttctccaacagaaaata 596

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>ref|XM_475674.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 825

 Score =  256 bits (129), Expect = 5e-65
 Identities = 243/281 (86%)
 Strand = Plus / Minus

                                                                       
Query: 166 ctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaaggtggtcat 225
           |||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||||||||  |
Sbjct: 825 ctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaaggtggtatt 766

                                                                       
Query: 226 ccctctagcagggccgcagtttttccgctctgggttctgggtgccacgagggggtgtttc 285
           ||||| ||||||||| |||||||||||||||||||  || ||||| ||||| || |||||
Sbjct: 765 ccctccagcagggccacagtttttccgctctgggtgttgtgtgccgcgaggaggggtttc 706

                                                                       
Query: 286 tcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtcttcgtaata 345
           ||||||| ||||||| || ||||  ||||||||||| || ||||||||||| || |||||
Sbjct: 705 tcctcttttcagcatctcgacgatctcaacaactcgtttaggagtgaggtcctcataata 646

                                                                       
Query: 346 attgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatgggagcgtt 405
            |||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||
Sbjct: 645 gttgtatgtgtaaccctctgaacctttagaataatcggccacagcaatcatgggagcatt 586

                                                    
Query: 406 cacacagcaacccatgcattccatttcaccgacagaaaata 446
           ||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 585 cacacagcagcccatgcactccatttctccaacagaaaata 545

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>gb|DQ175979.1| Hordeum vulgare subsp. vulgare clone 41-30A-RB flanking T-DNA
           insertion sequence
          Length = 586

 Score =  159 bits (80), Expect = 9e-36
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                       
Query: 339 cgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatgg 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatgg 416

                               
Query: 399 gagcgttcacacagcaaccc 418
           ||||||||||||||||||||
Sbjct: 417 gagcgttcacacagcaaccc 436

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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score =  111 bits (56), Expect = 2e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                         
Query: 157   aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 216
             ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 86071 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 86012

                                                         
Query: 217   ggtggtcatccctctagcagggccgcagtttttccgctctgggt 260
             ||||||  |||||| ||||||||| |||||||||||||||||||
Sbjct: 86011 ggtggtattccctccagcagggccacagtttttccgctctgggt 85968



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 341   taataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatggga 400
             ||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||||||
Sbjct: 85315 taatagttgtatgtgtaaccctctgaacctttagaataatcggccacagcaatcatggga 85256

                           
Query: 401   gcgttcacacagca 414
             || |||||||||||
Sbjct: 85255 gcattcacacagca 85242



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 281   gtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtc 336
             |||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||
Sbjct: 85809 gtttctcctcttttcagcatctcgacgatctcaacaactcgtttaggagtgaggtc 85754

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 2e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                            
Query: 157      aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 216
                ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 25017218 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 25017159

                                                            
Query: 217      ggtggtcatccctctagcagggccgcagtttttccgctctgggt 260
                ||||||  |||||| ||||||||| |||||||||||||||||||
Sbjct: 25017158 ggtggtattccctccagcagggccacagtttttccgctctgggt 25017115



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 341      taataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatcatggga 400
                ||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||||||
Sbjct: 25016462 taatagttgtatgtgtaaccctctgaacctttagaataatcggccacagcaatcatggga 25016403

                              
Query: 401      gcgttcacacagca 414
                || |||||||||||
Sbjct: 25016402 gcattcacacagca 25016389



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281      gtttctcctcttctcagcatttcaacgagttcaacaactcgctttggagtgaggtc 336
                |||||||||||| ||||||| || ||||  ||||||||||| || |||||||||||
Sbjct: 25016956 gtttctcctcttttcagcatctcgacgatctcaacaactcgtttaggagtgaggtc 25016901

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>emb|BX828161.1|CNS0A2Z8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH59ZC02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 987

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatc 394
           |||||| ||||||| ||||| || || ||||| || |||||||||||||||||||  |||
Sbjct: 642 tcttcgaaataattatatgtatatccttctgatccattggaatagtcagccacagtgatc 583

                                              
Query: 395 atgggagcgttcacacagcaacccatgcattccat 429
           ||||| || || ||||| || |||||||| |||||
Sbjct: 582 atgggtgcattaacacaacatcccatgcactccat 548

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>ref|NM_116492.2| Arabidopsis thaliana NADH dehydrogenase (ubiquinone) AT4G02580
           mRNA, complete cds
          Length = 1110

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatc 394
           |||||| |||| || ||||| || || ||||| || |||||||||||||||||||  |||
Sbjct: 691 tcttcgaaatagttatatgtatatccttctgatccattggaatagtcagccacagtgatc 632

                                              
Query: 395 atgggagcgttcacacagcaacccatgcattccat 429
           ||||| || || ||||| || |||||||| |||||
Sbjct: 631 atgggtgcattaacacaacatcccatgcactccat 597

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>gb|AY052326.1| Arabidopsis thaliana AT4g02580/T10P11_14 mRNA, complete cds
          Length = 1003

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatc 394
           |||||| |||| || ||||| || || ||||| || |||||||||||||||||||  |||
Sbjct: 690 tcttcgaaatagttatatgtatatccttctgatccattggaatagtcagccacagtgatc 631

                                              
Query: 395 atgggagcgttcacacagcaacccatgcattccat 429
           ||||| || || ||||| || |||||||| |||||
Sbjct: 630 atgggtgcattaacacaacatcccatgcactccat 596

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>emb|BX826545.1|CNS0A3A1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB38ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 954

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatc 394
           |||||| |||| || ||||| || || ||||| || |||||||||||||||||||  |||
Sbjct: 605 tcttcgaaatagttatatgtatatccttctgatccattggaatagtcagccacagtgatc 546

                                              
Query: 395 atgggagcgttcacacagcaacccatgcattccat 429
           ||||| || || ||||| || |||||||| |||||
Sbjct: 545 atgggtgcattaacacaacatcccatgcactccat 511

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>emb|BX826476.1|CNS0A380 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB2ZB07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1049

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatc 394
           |||||| |||| || ||||| || || ||||| || |||||||||||||||||||  |||
Sbjct: 652 tcttcgaaatagttatatgtatatccttctgatccattggaatagtcagccacagtgatc 593

                                              
Query: 395 atgggagcgttcacacagcaacccatgcattccat 429
           ||||| || || ||||| || |||||||| |||||
Sbjct: 592 atgggtgcattaacacaacatcccatgcactccat 558

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>gb|BT001140.1| Arabidopsis thaliana At4g02580/T10P11_14 mRNA, complete cds
          Length = 768

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcttcgtaataattgtatgtgtaaccatctgaacccttggaatagtcagccacagcaatc 394
           |||||| |||| || ||||| || || ||||| || |||||||||||||||||||  |||
Sbjct: 599 tcttcgaaatagttatatgtatatccttctgatccattggaatagtcagccacagtgatc 540

                                              
Query: 395 atgggagcgttcacacagcaacccatgcattccat 429
           ||||| || || ||||| || |||||||| |||||
Sbjct: 539 atgggtgcattaacacaacatcccatgcactccat 505

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>gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM,
             complete sequence
          Length = 113566

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 362   tctgaacccttggaatagtcagccacagcaatcatggg 399
             ||||| || |||||||||||||||||||  ||||||||
Sbjct: 74689 tctgatccattggaatagtcagccacagtgatcatggg 74726

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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 362    tctgaacccttggaatagtcagccacagcaatcatggg 399
              ||||| || |||||||||||||||||||  ||||||||
Sbjct: 172056 tctgatccattggaatagtcagccacagtgatcatggg 172019

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>gb|AC155294.2| Mus musculus BAC clone RP24-328F24 from chromosome 13, complete
             sequence
          Length = 174186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   tttctcctcttctcagcattt 302
             |||||||||||||||||||||
Sbjct: 73030 tttctcctcttctcagcattt 73050

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>gb|U50066.1| Caenorhabditis elegans cosmid T14A8, complete sequence
          Length = 9170

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   acaagaaagctttgagaaca 79
            ||||||||||||||||||||
Sbjct: 7589 acaagaaagctttgagaaca 7608

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>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25
             Contains a ribosomal protein L3 (RPL3) pseudogene,
             complete sequence
          Length = 137154

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   tatgtgtaaccatctgaacc 369
             ||||||||||||||||||||
Sbjct: 67442 tatgtgtaaccatctgaacc 67423

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>emb|AL359375.16| Human DNA sequence from clone RP11-93K18 on chromosome 10, complete
             sequence
          Length = 126846

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   ctcttctcagcatttcaacg 307
             ||||||||||||||||||||
Sbjct: 37037 ctcttctcagcatttcaacg 37056

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>gb|AC079269.8| Homo sapiens chromosome 10 clone RP11-379L21, complete sequence
          Length = 196004

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   ctcttctcagcatttcaacg 307
             ||||||||||||||||||||
Sbjct: 16366 ctcttctcagcatttcaacg 16385

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>gb|AF238375.3| Homo sapiens chromosome 21 clone BAC 49B5 map 21q21, complete sequence
          Length = 166124

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 125    gccaacttatttgtgtgcttgctt 148
              |||||||| |||||||||||||||
Sbjct: 116671 gccaacttgtttgtgtgcttgctt 116648

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>emb|CR389787.1| Gallus gallus finished cDNA, clone ChEST713n9
          Length = 855

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 7   caaaagaaagcttcgacaacaaca 30
           ||||||||||||| ||||||||||
Sbjct: 439 caaaagaaagctttgacaacaaca 462

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>gb|AC051624.6|AC051624 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0036B06, from Chromosome 10, complete sequence
          Length = 148263

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   catttcaacgagttcaacaa 317
             ||||||||||||||||||||
Sbjct: 26255 catttcaacgagttcaacaa 26236

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     catttcaacgagttcaacaa 317
               ||||||||||||||||||||
Sbjct: 7945003 catttcaacgagttcaacaa 7945022

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>dbj|BS000057.1| Pan troglodytes chromosome 22 clone:RP43-020J03, map 22, complete
              sequences
          Length = 185342

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 125    gccaacttatttgtgtgcttgctt 148
              |||||||| |||||||||||||||
Sbjct: 111538 gccaacttgtttgtgtgcttgctt 111515

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>dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, section 21/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 125    gccaacttatttgtgtgcttgctt 148
              |||||||| |||||||||||||||
Sbjct: 304239 gccaacttgtttgtgtgcttgctt 304216

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>gb|AC116556.14| Mus musculus strain C57BL/6J chromosome 8 clone rp23-184i13, complete
              sequence
          Length = 239958

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttatttgtgtgcttgcttgc 150
              ||||||||||||||||||||
Sbjct: 172254 ttatttgtgtgcttgcttgc 172273

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     catttcaacgagttcaacaa 317
               ||||||||||||||||||||
Sbjct: 7950102 catttcaacgagttcaacaa 7950121

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>gb|AC140919.2| Mus musculus BAC clone RP24-510L10 from 1, complete sequence
          Length = 159472

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttatttgtgtgcttgcttgc 150
              ||||||||||||||||||||
Sbjct: 146961 ttatttgtgtgcttgcttgc 146980

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>dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B732H1,
             LL56-APP region, complete sequence
          Length = 204699

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   gccaacttatttgtgtgcttgctt 148
             |||||||| |||||||||||||||
Sbjct: 48660 gccaacttgtttgtgtgcttgctt 48637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,827,813
Number of Sequences: 3902068
Number of extensions: 3827813
Number of successful extensions: 66534
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66430
Number of HSP's gapped (non-prelim): 104
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result