ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast02d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HN_PI4HA (P21526) Hemagglutinin-neuraminidase (EC 3.2.1.18) 30 1.4
2JIL1_DROME (Q9V3I5) Chromosomal serine/threonine-protein kinase ... 30 1.8
3ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp... 28 6.8
4MUC15_HUMAN (Q8N387) Mucin-15 precursor 27 8.9

>HN_PI4HA (P21526) Hemagglutinin-neuraminidase (EC 3.2.1.18)|
          Length = 573

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 182 RDRLPLSAPKNHFPNRKQSRYTNFLI 259
           +D LPLS P   FP+ KQ+ YT F +
Sbjct: 476 QDILPLSYPNTAFPHLKQAYYTGFYL 501



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>JIL1_DROME (Q9V3I5) Chromosomal serine/threonine-protein kinase JIL-1 (EC|
            2.7.11.1)
          Length = 1207

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 165  LLHSSPETGFRSPRQKITFRTENNLVIPTS 254
            L+   PET FR PR +   RTE+ LV P S
Sbjct: 1025 LIPVEPETTFRRPRTRQQRRTESQLVQPVS 1054



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>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 130 HHITDEIISGSRCSTQAQRPASALRAKKSLSEQKTISLYQ 249
           HH+  +++SGS  S+    P+S+L       +Q++  L Q
Sbjct: 632 HHLQPQLVSGSMASSVITPPSSSLNQSFQQQQQQSKQLQQ 671



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>MUC15_HUMAN (Q8N387) Mucin-15 precursor|
          Length = 334

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 167 APLKPRDRLPLSAPKNHFPNRKQSRYTNFLI---IKLPDVSTI 286
           AP+   D LP+SA  N  P      +T  L+   +K PD S+I
Sbjct: 124 APIADEDLLPISAHPNATPALSSENFTWSLVNDTVKTPDNSSI 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,705,018
Number of Sequences: 219361
Number of extensions: 584945
Number of successful extensions: 1210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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