ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast02a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 276 bits (139), Expect = 6e-71 Identities = 228/257 (88%), Gaps = 3/257 (1%) Strand = Plus / Minus Query: 184 tgagctcctggtagaacgcctccttgaacctggccaggctctcgggctccatggccacca 243 ||||||||| |||||| | ||||||||| |||| ||||||||||| ||||||||||| | Sbjct: 4281317 tgagctcctcatagaacacatccttgaacttggcaaggctctcggggtccatggccacga 4281258 Query: 244 cgacgtccagccggccgtcgtcgtcgg---ggccaggcacgaggtacacgaggccgctga 300 ||||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||| Sbjct: 4281257 cgacgtcgagccggccgtcgccgtcgtctcggcctggcacgaggtagacgaggccgctga 4281198 Query: 301 actggaggcaggccctgcccatgaacgccggccgcccccagccgaagtcggcgctgtaga 360 |||||||||| || | |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4281197 actggaggcacgcacgccccatgaacgccggccgcccccagccgaagtcggcgtcgtaga 4281138 Query: 361 tcggcagcccctgccagcttatcacccacaggtcggtctccggcatgacccactccccct 420 |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| Sbjct: 4281137 gcggcagcccctgccagctgatcacccacaggtcactctccggcatcacccactccccct 4281078 Query: 421 tgcgcagccccgacgcg 437 |||| ||||||| |||| Sbjct: 4281077 tgcggagccccgccgcg 4281061 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 318 cccatgaacgccggccgcccccagccgaagtcggcg 353 ||||||||||||||| ||||| |||||||||||| Sbjct: 4312740 cccatgaacgccggcgagccccacccgaagtcggcg 4312775
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 276 bits (139), Expect = 6e-71 Identities = 228/257 (88%), Gaps = 3/257 (1%) Strand = Plus / Minus Query: 184 tgagctcctggtagaacgcctccttgaacctggccaggctctcgggctccatggccacca 243 ||||||||| |||||| | ||||||||| |||| ||||||||||| ||||||||||| | Sbjct: 126538 tgagctcctcatagaacacatccttgaacttggcaaggctctcggggtccatggccacga 126479 Query: 244 cgacgtccagccggccgtcgtcgtcgg---ggccaggcacgaggtacacgaggccgctga 300 ||||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||| Sbjct: 126478 cgacgtcgagccggccgtcgccgtcgtctcggcctggcacgaggtagacgaggccgctga 126419 Query: 301 actggaggcaggccctgcccatgaacgccggccgcccccagccgaagtcggcgctgtaga 360 |||||||||| || | |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 126418 actggaggcacgcacgccccatgaacgccggccgcccccagccgaagtcggcgtcgtaga 126359 Query: 361 tcggcagcccctgccagcttatcacccacaggtcggtctccggcatgacccactccccct 420 |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| Sbjct: 126358 gcggcagcccctgccagctgatcacccacaggtcactctccggcatcacccactccccct 126299 Query: 421 tgcgcagccccgacgcg 437 |||| ||||||| |||| Sbjct: 126298 tgcggagccccgccgcg 126282 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 318 cccatgaacgccggccgcccccagccgaagtcggcg 353 ||||||||||||||| ||||| |||||||||||| Sbjct: 157961 cccatgaacgccggcgagccccacccgaagtcggcg 157996
>dbj|AK109842.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E02, full insert sequence Length = 1500 Score = 276 bits (139), Expect = 6e-71 Identities = 228/257 (88%), Gaps = 3/257 (1%) Strand = Plus / Minus Query: 184 tgagctcctggtagaacgcctccttgaacctggccaggctctcgggctccatggccacca 243 ||||||||| |||||| | ||||||||| |||| ||||||||||| ||||||||||| | Sbjct: 1385 tgagctcctcatagaacacatccttgaacttggcaaggctctcggggtccatggccacga 1326 Query: 244 cgacgtccagccggccgtcgtcgtcgg---ggccaggcacgaggtacacgaggccgctga 300 ||||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||| Sbjct: 1325 cgacgtcgagccggccgtcgccgtcgtctcggcctggcacgaggtagacgaggccgctga 1266 Query: 301 actggaggcaggccctgcccatgaacgccggccgcccccagccgaagtcggcgctgtaga 360 |||||||||| || | |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1265 actggaggcacgcacgccccatgaacgccggccgcccccagccgaagtcggcgtcgtaga 1206 Query: 361 tcggcagcccctgccagcttatcacccacaggtcggtctccggcatgacccactccccct 420 |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| Sbjct: 1205 gcggcagcccctgccagctgatcacccacaggtcactctccggcatcacccactccccct 1146 Query: 421 tgcgcagccccgacgcg 437 |||| ||||||| |||| Sbjct: 1145 tgcggagccccgccgcg 1129
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 323 gaacgccggccgcccccagccgaagtcggcgctgtagatcggcagcccctgccagcttat 382 ||||||||| |||||||| |||||||||||| |||||| |||| ||| ||||||| | Sbjct: 15197820 gaacgccgggcgcccccacccgaagtcggcgtcgtagatgggcatcccgagccagctcac 15197879 Query: 383 cacccacaggtcggtctccggcatga 408 |||||||||||| ||||||||||||| Sbjct: 15197880 cacccacaggtccgtctccggcatga 15197905 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 19649821 tccagccggccgtcgtcgtcg 19649841
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 323 gaacgccggccgcccccagccgaagtcggcgctgtagatcggcagcccctgccagcttat 382 ||||||||| |||||||| |||||||||||| |||||| |||| ||| ||||||| | Sbjct: 91796 gaacgccgggcgcccccacccgaagtcggcgtcgtagatgggcatcccgagccagctcac 91855 Query: 383 cacccacaggtcggtctccggcatga 408 |||||||||||| ||||||||||||| Sbjct: 91856 cacccacaggtccgtctccggcatga 91881
>dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full insert sequence Length = 1707 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 323 gaacgccggccgcccccagccgaagtcggcgctgtagatcggcagcccctgccagcttat 382 ||||||||| |||||||| |||||||||||| |||||| |||| ||| ||||||| | Sbjct: 1247 gaacgccgggcgcccccacccgaagtcggcgtcgtagatgggcatcccgagccagctcac 1188 Query: 383 cacccacaggtcggtctccggcatga 408 |||||||||||| ||||||||||||| Sbjct: 1187 cacccacaggtccgtctccggcatga 1162
>dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D08, full insert sequence Length = 1706 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 323 gaacgccggccgcccccagccgaagtcggcgctgtagatcggcagcccctgccagcttat 382 ||||||||| |||||||| |||||||||||| |||||| |||| ||| ||||||| | Sbjct: 1246 gaacgccgggcgcccccacccgaagtcggcgtcgtagatgggcatcccgagccagctcac 1187 Query: 383 cacccacaggtcggtctccggcatga 408 |||||||||||| ||||||||||||| Sbjct: 1186 cacccacaggtccgtctccggcatga 1161
>ref|XM_466682.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1671 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct: 1304 gcccatgaacaccggccgcccccagccgaagtcggcgtcgtggatcggcag 1254
>ref|XM_506864.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.15 mRNA Length = 1716 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct: 1304 gcccatgaacaccggccgcccccagccgaagtcggcgtcgtggatcggcag 1254
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct: 24103596 gcccatgaacaccggccgcccccagccgaagtcggcgtcgtggatcggcag 24103546
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct: 62337 gcccatgaacaccggccgcccccagccgaagtcggcgtcgtggatcggcag 62287
>dbj|AK104319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E04, full insert sequence Length = 1671 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct: 1304 gcccatgaacaccggccgcccccagccgaagtcggcgtcgtggatcggcag 1254
>dbj|AK060705.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G09, full insert sequence Length = 1714 Score = 69.9 bits (35), Expect = 7e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct: 1302 gcccatgaacaccggccgcccccagccgaagtcggcgtcgtggatcggcag 1252
>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate hydroxycinnamoyltransferase 3, complete cds Length = 1659 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| | ||||| |||||||||||||||||| || ||||||||| Sbjct: 1197 gcccatgaacacgggccggccccagccgaagtcggcgtcgtggatcggcag 1147
>dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthranilate hydroxycinnamoyltransferase 2, complete cds Length = 1770 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| | ||||| |||||||||||||||||| || ||||||||| Sbjct: 1344 gcccatgaacacgggccggccccagccgaagtcggcgtcgtggatcggcag 1294
>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate hydroxycinnamoyltransferase 1, complete cds Length = 1755 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 gcccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 |||||||||| | ||||| |||||||||||||||||| || ||||||||| Sbjct: 1324 gcccatgaacacgggccggccccagccgaagtcggcgtcgtggatcggcag 1274
>dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthranilate hydroxycinnamoyltransferase 4, partial cds Length = 1100 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 318 cccatgaacgccggccgcccccagccgaagtcggcgctgtagatcggcag 367 ||||||||| | ||||||||||| ||||| |||||| ||| ||||||||| Sbjct: 777 cccatgaacacgggccgcccccaaccgaaatcggcgttgtggatcggcag 728
>gb|AF546155.1| Streptomyces macromomyceticus UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10514 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 236 ggccaccacgacgtccagccggccgtcgtcgtcgg 270 ||||||||||| |||||| ||||||||| |||||| Sbjct: 2570 ggccaccacgaagtccaggcggccgtcgccgtcgg 2536
>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence Length = 227492 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 tttagctttgcacttattttta 126 |||||||||||||||||||||| Sbjct: 192527 tttagctttgcacttattttta 192506
>gb|AC157919.5| Mus musculus chromosome 3, clone RP23-131B7, complete sequence Length = 190453 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tttagctttgcacttattttta 126 |||||||||||||||||||||| Sbjct: 131188 tttagctttgcacttattttta 131209
>dbj|AK038691.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230055I01 product:Hypothetical Lipolytic enzymes/esterase/lipase/thioesterase family active site containing protein, full insert sequence Length = 832 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tttagctttgcacttattttta 126 |||||||||||||||||||||| Sbjct: 786 tttagctttgcacttattttta 807
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 235 tggccaccacgacgtccagccggccg 260 |||||||||| ||||||||||||||| Sbjct: 4624582 tggccaccaccacgtccagccggccg 4624557
>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene cluster, complete sequence Length = 66871 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 acgccggccgcccccagccga 345 ||||||||||||||||||||| Sbjct: 1163 acgccggccgcccccagccga 1143
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 101218 tccagccggccgtcgtcgtcg 101238 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 101033 tccagccggccgtcgtcgtcg 101053
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 132896 tccagccggccgtcgtcgtcg 132916
>emb|AL031390.4|HS197L1 Human DNA sequence from clone RP1-197L1 on chromosome 6q24.1-25.2 Contains a pseudogene similar to a hypothetical mouse protein, the gene for hypothetical protein MGC3133 and part of the PLAGL1 gene for pleiomorphic adenoma gene-like 1 (PLAG-like 1, LOT1, ZAC, ZAC tumor suppressor). Contains two CpG islands, complete sequence Length = 101846 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ctgtagatcggcagcccctgc 374 ||||||||||||||||||||| Sbjct: 12585 ctgtagatcggcagcccctgc 12605
>gb|BT009450.1| Triticum aestivum clone wlmk8.pk0021.e3:fis, full insert mRNA sequence Length = 1587 Score = 42.1 bits (21), Expect = 1.5 Identities = 60/73 (82%) Strand = Plus / Minus Query: 336 ccccagccgaagtcggcgctgtagatcggcagcccctgccagcttatcacccacaggtcg 395 ||||| || ||||||||| ||| || |||| ||| ||||||| | |||||||||||| Sbjct: 1200 ccccacccaaagtcggcgtcgtacatgggcatcccgagccagctcaccacccacaggtcc 1141 Query: 396 gtctccggcatga 408 | ||||||||||| Sbjct: 1140 gactccggcatga 1128
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 16777108 tccagccggccgtcgtcgtcg 16777128 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 16776923 tccagccggccgtcgtcgtcg 16776943
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1399_D07, complete sequence Length = 65000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tccagccggccgtcgtcgtcg 269 ||||||||||||||||||||| Sbjct: 59303 tccagccggccgtcgtcgtcg 59323
>emb|X98515.1|SPSNBAGEN S.pristinaespiralis snbA gene Length = 1879 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 238 ccaccacgacgtccagccggccgtcgtcgtcg 269 ||||| ||||||||||| ||||| |||||||| Sbjct: 1486 ccaccccgacgtccagcaggccgccgtcgtcg 1517
>emb|AL683829.15| Mouse DNA sequence from clone RP23-64F17 on chromosome 4 Contains two novel genes, the gene for a novel major urinary protein (Mup) family member, the Zfp37 gene for zinc finger protein 37, the Slc31a2 gene for solute carrier family 31 member 2 and two CpG islands, complete sequence Length = 223133 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 atttcgagcgctgtggcagt 98 |||||||||||||||||||| Sbjct: 117282 atttcgagcgctgtggcagt 117263
>emb|BX465863.11| Zebrafish DNA sequence from clone RP71-5C20 in linkage group 5, complete sequence Length = 117261 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 43513 gcagtttttattttagcttt 43494
>emb|CR536621.7| Zebrafish DNA sequence from clone CH211-158M1, complete sequence Length = 155945 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 153619 gcagtttttattttagcttt 153600
>emb|BX571803.23| Zebrafish DNA sequence from clone DKEY-273G3 in linkage group 9, complete sequence Length = 241708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 133802 gcagtttttattttagcttt 133821
>emb|BX927201.9| Zebrafish DNA sequence from clone DKEY-12D17 in linkage group 5, complete sequence Length = 101099 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 14974 gcagtttttattttagcttt 14955
>emb|BX248092.16| Zebrafish DNA sequence from clone CH211-194K22 in linkage group 12, complete sequence Length = 217001 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 17054 gcagtttttattttagcttt 17035
>emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, complete sequence Length = 174414 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 99820 gcagtttttattttagcttt 99839
>emb|BX510644.3| Zebrafish DNA sequence from clone CH211-153L6 in linkage group 2, complete sequence Length = 141516 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 87029 gcagtttttattttagcttt 87010
>dbj|AK043700.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830021G05 product:finger protein zfp-37 homolog [Mus musculus], full insert sequence Length = 2563 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 atttcgagcgctgtggcagt 98 |||||||||||||||||||| Sbjct: 1473 atttcgagcgctgtggcagt 1492
>emb|BX547992.4| Zebrafish DNA sequence from clone DKEY-225I9 in linkage group 3, complete sequence Length = 181320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 7334 gcagtttttattttagcttt 7353
>gb|AE004558.1| Pseudomonas aeruginosa PAO1, section 119 of 529 of the complete genome Length = 9917 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ccccagccgaagtcggcgct 355 |||||||||||||||||||| Sbjct: 3274 ccccagccgaagtcggcgct 3255
>gb|AC084123.9| Homo sapiens chromosome 8, clone CTD-2267H22, complete sequence Length = 120725 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 atctatcaatctcacatcaaatgg 31 |||||||| ||||||||||||||| Sbjct: 89237 atctatcattctcacatcaaatgg 89214
>gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, complete sequence Length = 194189 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 atctatcaatctcacatcaaatgg 31 |||||||| ||||||||||||||| Sbjct: 27291 atctatcattctcacatcaaatgg 27268
>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence Length = 159230 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tttagctttgcacttatttt 124 |||||||||||||||||||| Sbjct: 117071 tttagctttgcacttatttt 117052
>dbj|AP003489.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0568D10 Length = 63101 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 318 cccatgaacgccggccgcccccagccgaagtcggcg 353 ||||||||||||||| ||||| |||||||||||| Sbjct: 4320 cccatgaacgccggcgagccccacccgaagtcggcg 4355
>emb|BX000444.11| Zebrafish DNA sequence from clone RP71-31C2 in linkage group 9, complete sequence Length = 128377 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 95510 gcagtttttattttagcttt 95491
>emb|AL935317.10| Zebrafish DNA sequence from clone CH211-199I10, complete sequence Length = 200098 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcagtttttattttagcttt 113 |||||||||||||||||||| Sbjct: 74489 gcagtttttattttagcttt 74470
>gb|AC171733.1| Lycopersicon esculentum chromosome 11 clone C11HBa0034I10, complete sequence Length = 95704 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 98 tttttattttagctttgcacttattttt 125 ||||||||||| ||||||||||||||| Sbjct: 33682 tttttattttacttttgcacttattttt 33655
>emb|Z68953.1|HSLAM002 H.sapiens mRNA for immunoglobulin kappa light chain VJ region (ID LAM002) Length = 388 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 aacctggccaggctctcgggctcc 233 ||||||||||||||| |||||||| Sbjct: 182 aacctggccaggctcccgggctcc 205
>emb|AJ414744.1|HSA414744 Homo sapiens partial IGVKA27 gene for immunoglobulin kappa chain variable region, donor BJ, cell63 Length = 337 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 aacctggccaggctctcgggctcc 233 ||||||||||||||||| |||||| Sbjct: 56 aacctggccaggctctcaggctcc 79
>dbj|AB062169.1| Takifugu rubripes FrGCS-alpha1 gene for soluble guanylyl cyclase alpha1 subunit, complete cds Length = 10941 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 atttttatgctcagatgatgagca 143 ||||||||||| |||||||||||| Sbjct: 8234 atttttatgctaagatgatgagca 8257
>gb|U07507.1|HSU07507 Human clone JLCD5/8 immunoglobulin kappa chain (IgK) mRNA, VKIII-JK4 region, partial cds Length = 276 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 aacctggccaggctctcgggctcc 233 ||||||||||||||| |||||||| Sbjct: 62 aacctggccaggctcccgggctcc 85 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,129,913 Number of Sequences: 3902068 Number of extensions: 4129913 Number of successful extensions: 126112 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125765 Number of HSP's gapped (non-prelim): 344 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
