ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast02a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
2dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AK105698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
4gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
5ref|XM_470186.1| Oryza sativa (japonica cultivar-group), predic... 64 4e-07
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 4e-07
7gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9dbj|AK065483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
10ref|XM_467818.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
11emb|Z54354.1|SPAC2G11 S.pombe chromosome I cosmid c2G11 44 0.40
12ref|NM_001018481.1| Schizosaccharomyces pombe 972h- hypothetical... 44 0.40
13dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
14dbj|AK070999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
15gb|AC138460.4| Mus musculus BAC clone RP23-295A7 from 8, complet... 44 0.40
16gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome... 44 0.40
17gb|AF116520.1|AF116519S2 Mus musculus periplakin (ppl) gene, exo... 42 1.6
18gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome... 42 1.6
19gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosom... 42 1.6
20gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosom... 42 1.6
21gb|AC097523.4| Homo sapiens BAC clone RP11-597P14 from 2, comple... 42 1.6
22dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.6
23emb|AL117195.1|CEY57A10A Caenorhabditis elegans YAC Y57A10A, com... 42 1.6
24gb|AC125012.12| Mus musculus chromosome 7, clone RP24-143K11, co... 40 6.3
25gb|BC010459.1| Mus musculus nucleobindin 2, mRNA (cDNA clone MGC... 40 6.3
26ref|NM_016773.1| Mus musculus nucleobindin 2 (Nucb2), mRNA 40 6.3
27gb|AC163222.4| Mus musculus chromosome 7, clone RP24-157O12, com... 40 6.3
28gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome... 40 6.3
29gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome... 40 6.3
30gb|AC093601.4| Homo sapiens BAC clone RP11-338P22 from 4, comple... 40 6.3
31dbj|AK145934.1| Mus musculus 13 days pregnant adult female place... 40 6.3
32dbj|AK160442.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 40 6.3
33emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chr... 40 6.3
34emb|AJ222586.1|MMNEFA Mus musculus mRNA for NEFA protein, comple... 40 6.3 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                           
Query: 405     tccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctcatggatgagcgt 464
               ||||||||||||||||||||||||||  || |||| ||| || ||||| |||||||||||
Sbjct: 1138939 tccacccatgcgcctcctgagccggctccgtgtcatccggatcgcctcctggatgagcgt 1138880

                   
Query: 465     ctcc 468
               ||||
Sbjct: 1138879 ctcc 1138876



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 400      ccagatccacccatgcgcctcc 421
                ||||||||||||||||||||||
Sbjct: 31583437 ccagatccacccatgcgcctcc 31583458
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1020_C02
          Length = 124578

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 405   tccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctcatggatgagcgt 464
             ||||||||||||||||||||||||||  || |||| ||| || ||||| |||||||||||
Sbjct: 91463 tccacccatgcgcctcctgagccggctccgtgtcatccggatcgcctcctggatgagcgt 91404

                 
Query: 465   ctcc 468
             ||||
Sbjct: 91403 ctcc 91400
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>dbj|AK105698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D03, full
            insert sequence
          Length = 2074

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 405  tccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctcatggatgagcgt 464
            ||||||||||||||||||||||||||  || |||| ||| || ||||| |||||||||||
Sbjct: 1772 tccacccatgcgcctcctgagccggctccgtgtcatccggatcgcctcctggatgagcgt 1713

                
Query: 465  ctcc 468
            ||||
Sbjct: 1712 ctcc 1709
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>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                         
Query: 393   tggaggtccagatccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctc 452
             |||||||||||| ||  || |||||||||| |||||||| |  |||| ||||||||||||
Sbjct: 42350 tggaggtccagacccggccgtgcgcctcctaagccggcccctcgtcatccgaatagcctc 42409

                         
Query: 453   atggatgagcgt 464
              |||||||||||
Sbjct: 42410 ctggatgagcgt 42421
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>ref|XM_470186.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1377

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 393  tggaggtccagatccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctc 452
            |||||||||||| ||  || |||||||||| |||||||| |  |||| ||||||||||||
Sbjct: 1368 tggaggtccagacccggccgtgcgcctcctaagccggcccctcgtcatccgaatagcctc 1309

                        
Query: 453  atggatgagcgt 464
             |||||||||||
Sbjct: 1308 ctggatgagcgt 1297
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 393     tggaggtccagatccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctc 452
               |||||||||||| ||  || |||||||||| |||||||| |  |||| ||||||||||||
Sbjct: 1816711 tggaggtccagacccggccgtgcgcctcctaagccggcccctcgtcatccgaatagcctc 1816770

                           
Query: 453     atggatgagcgt 464
                |||||||||||
Sbjct: 1816771 ctggatgagcgt 1816782
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>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08,
             complete sequence
          Length = 133090

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                         
Query: 393   tggaggtccagatccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctc 452
             |||||||||||| ||  || |||||||||| |||||||| |  |||| ||||||||||||
Sbjct: 17651 tggaggtccagacccggccgtgcgcctcctaagccggcccctcgtcatccgaatagcctc 17592

                         
Query: 453   atggatgagcgt 464
              |||||||||||
Sbjct: 17591 ctggatgagcgt 17580
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 393     tggaggtccagatccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctc 452
               |||||||||||| ||  || |||||||||| |||||||| |  |||| ||||||||||||
Sbjct: 1816709 tggaggtccagacccggccgtgcgcctcctaagccggcccctcgtcatccgaatagcctc 1816768

                           
Query: 453     atggatgagcgt 464
                |||||||||||
Sbjct: 1816769 ctggatgagcgt 1816780
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>dbj|AK065483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013008G03, full
            insert sequence
          Length = 1531

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 393  tggaggtccagatccacccatgcgcctcctgagccggcctcgagtcaaccgaatagcctc 452
            |||||||||||| ||  || |||||||||| |||||||| |  |||| ||||||||||||
Sbjct: 1110 tggaggtccagacccggccgtgcgcctcctaagccggcccctcgtcatccgaatagcctc 1051

                        
Query: 453  atggatgagcgt 464
             |||||||||||
Sbjct: 1050 ctggatgagcgt 1039
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>ref|XM_467818.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1895

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 400 ccagatccacccatgcgcctcc 421
           ||||||||||||||||||||||
Sbjct: 132 ccagatccacccatgcgcctcc 153
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>emb|Z54354.1|SPAC2G11 S.pombe chromosome I cosmid c2G11
          Length = 36162

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 42   ccagagattgttcaacttcacc 63
            ||||||||||||||||||||||
Sbjct: 6890 ccagagattgttcaacttcacc 6911
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>ref|NM_001018481.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC2G11.03c),
            partial mRNA
          Length = 1677

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 42   ccagagattgttcaacttcacc 63
            ||||||||||||||||||||||
Sbjct: 1072 ccagagattgttcaacttcacc 1051
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>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0431B06
          Length = 154796

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 400   ccagatccacccatgcgcctcc 421
             ||||||||||||||||||||||
Sbjct: 73997 ccagatccacccatgcgcctcc 74018
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>dbj|AK070999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079A01, full
           insert sequence
          Length = 1895

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 400 ccagatccacccatgcgcctcc 421
           ||||||||||||||||||||||
Sbjct: 132 ccagatccacccatgcgcctcc 153
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>gb|AC138460.4| Mus musculus BAC clone RP23-295A7 from 8, complete sequence
          Length = 186258

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 75     ttccagcacagatgaagtcact 96
              ||||||||||||||||||||||
Sbjct: 173363 ttccagcacagatgaagtcact 173342
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>gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome 8, complete sequence
          Length = 222867

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 75    ttccagcacagatgaagtcact 96
             ||||||||||||||||||||||
Sbjct: 53020 ttccagcacagatgaagtcact 52999
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>gb|AF116520.1|AF116519S2 Mus musculus periplakin (ppl) gene, exons 2 through 14
          Length = 18583

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  aatttcaacagaacaaagttg 125
            |||||||||||||||||||||
Sbjct: 7198 aatttcaacagaacaaagttg 7218
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>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence
          Length = 233527

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    aatttcaacagaacaaagttg 125
              |||||||||||||||||||||
Sbjct: 189950 aatttcaacagaacaaagttg 189970
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>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete sequence
          Length = 181475

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    aatttcaacagaacaaagttg 125
              |||||||||||||||||||||
Sbjct: 112577 aatttcaacagaacaaagttg 112557
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>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete sequence
          Length = 181338

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    aatttcaacagaacaaagttg 125
              |||||||||||||||||||||
Sbjct: 160865 aatttcaacagaacaaagttg 160845
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>gb|AC097523.4| Homo sapiens BAC clone RP11-597P14 from 2, complete sequence
          Length = 108711

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   tggggtgggtttatatacaca 237
             |||||||||||||||||||||
Sbjct: 14636 tggggtgggtttatatacaca 14616
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 128     accgatttcgccaagcatctt 148
               |||||||||||||||||||||
Sbjct: 4112179 accgatttcgccaagcatctt 4112199
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>emb|AL117195.1|CEY57A10A Caenorhabditis elegans YAC Y57A10A, complete sequence
          Length = 165339

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 104    caatttcaacagaacaaagttggaa 128
              |||||||||||||||||||| ||||
Sbjct: 122091 caatttcaacagaacaaagtaggaa 122115
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>gb|AC125012.12| Mus musculus chromosome 7, clone RP24-143K11, complete sequence
          Length = 141809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cagacaggccaaggttctatcttt 32
             |||||||||||||||| |||||||
Sbjct: 65336 cagacaggccaaggttttatcttt 65313
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>gb|BC010459.1| Mus musculus nucleobindin 2, mRNA (cDNA clone MGC:5832
           IMAGE:3585076), complete cds
          Length = 1598

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cagacaggccaaggttctatcttt 32
           |||||||||||||||| |||||||
Sbjct: 198 cagacaggccaaggttttatcttt 175
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>ref|NM_016773.1| Mus musculus nucleobindin 2 (Nucb2), mRNA
          Length = 1655

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cagacaggccaaggttctatcttt 32
           |||||||||||||||| |||||||
Sbjct: 284 cagacaggccaaggttttatcttt 261
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>gb|AC163222.4| Mus musculus chromosome 7, clone RP24-157O12, complete sequence
          Length = 180557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 9      cagacaggccaaggttctatcttt 32
              |||||||||||||||| |||||||
Sbjct: 147567 cagacaggccaaggttttatcttt 147544
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>gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome 9, complete sequence
          Length = 217068

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    ccaatttcaacagaacaaag 122
              ||||||||||||||||||||
Sbjct: 146174 ccaatttcaacagaacaaag 146193
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>gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome 9, complete sequence
          Length = 181862

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     cagccagagattgttcaacttcac 62
              ||||||||||||||| ||||||||
Sbjct: 136662 cagccagagattgttgaacttcac 136639
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>gb|AC093601.4| Homo sapiens BAC clone RP11-338P22 from 4, complete sequence
          Length = 118129

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 214   gtgtggggtgggtttatatacaca 237
             ||||||||||||| ||||||||||
Sbjct: 18467 gtgtggggtgggtgtatatacaca 18444
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>dbj|AK145934.1| Mus musculus 13 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530016L17
           product:nucleobindin 2, full insert sequence
          Length = 1549

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cagacaggccaaggttctatcttt 32
           |||||||||||||||| |||||||
Sbjct: 239 cagacaggccaaggttttatcttt 216
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>dbj|AK160442.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810010M12 product:nucleobindin
           2, full insert sequence
          Length = 727

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cagacaggccaaggttctatcttt 32
           |||||||||||||||| |||||||
Sbjct: 132 cagacaggccaaggttttatcttt 109
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>emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chromosome 9, complete
             sequence
          Length = 151456

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    cagccagagattgttcaacttcac 62
             ||||||||||||||| ||||||||
Sbjct: 43709 cagccagagattgttgaacttcac 43686
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>emb|AJ222586.1|MMNEFA Mus musculus mRNA for NEFA protein, complete cds
          Length = 1655

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cagacaggccaaggttctatcttt 32
           |||||||||||||||| |||||||
Sbjct: 284 cagacaggccaaggttttatcttt 261


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,445,080
Number of Sequences: 3902068
Number of extensions: 3445080
Number of successful extensions: 81763
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81652
Number of HSP's gapped (non-prelim): 111
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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