ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast01h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor 37 0.010
2CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor 33 0.15
3CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor 32 0.32
4CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment) 32 0.55
5CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor 31 0.72
6CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor 31 0.72
7US10_EHV4 (P18349) 28 kDa protein (ORF3) 31 0.94
8COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Conta... 31 0.94
9CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor 30 1.2
10CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor 30 1.2
11CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor 30 1.2
12CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor 30 1.6
13COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morpholog... 30 1.6
14CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor 30 2.1
15CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor 30 2.1
16GUNB_FUSOX (P46236) Putative endoglucanase type B precursor (EC ... 30 2.1
17DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re... 30 2.1
18COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-... 29 2.7
19CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor 29 2.7
20CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor 29 2.7
21BSN_MOUSE (O88737) Bassoon protein 29 3.6
22SFTPA_MACMU (Q9TUC5) Pulmonary surfactant-associated protein A (... 29 3.6
23COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor 29 3.6
24CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor 29 3.6
25ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metall... 29 3.6
26DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 29 3.6
27CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor 29 3.6
28CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor 29 3.6
29AP2_ARATH (P47927) Floral homeotic protein APETALA2 28 4.7
30CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor 28 4.7
31CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (End... 28 4.7
32SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 28 4.7
33MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1 28 4.7
34CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments) 28 4.7
35MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 ant... 28 4.7
36MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen) 28 4.7
37ZN694_HUMAN (Q63HK3) Zinc finger protein 694 28 6.1
38CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor 28 6.1
39OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid) 28 6.1
40COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor 28 6.1
41IF2_MYCTU (P65131) Translation initiation factor IF-2 28 6.1
42IF2_MYCBO (P65132) Translation initiation factor IF-2 28 6.1
43COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemph... 28 6.1
44CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor 28 6.1
45CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor 28 6.1
46YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I 28 6.1
47CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor 28 8.0
48OTO1_ONCKE (P83371) Otolin-1 precursor 28 8.0
49MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 ... 28 8.0
50SFTA1_HUMAN (Q8IWL2) Pulmonary surfactant-associated protein A1 ... 28 8.0
51STF1_HORSE (Q9GKL2) Steroidogenic factor 1 (STF-1) (SF-1) 28 8.0
52CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor 28 8.0
53YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5 28 8.0
54MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1 28 8.0
55CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor 28 8.0

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 40  FHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AKKITLPEAPAGVSGLPNVAVNR 216
           F GPPGA   P+ V   SG    PP  P FPG  G        P  PAG+ G+P +   R
Sbjct: 390 FEGPPGAPG-PQGVVGPSG----PPGPPGFPGDPG--------PPGPAGLPGIPGIDGIR 436

Query: 217 HIPAREILTRFPFGG 261
             P   I+  F F G
Sbjct: 437 GPPGTVIMMPFQFAG 451



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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 24/57 (42%), Positives = 27/57 (47%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198
           GP   +GPPG    P   R   G    P A  FPG AGR     T P  P+G+SG P
Sbjct: 761 GPSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGISGPP 805



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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 23/57 (40%), Positives = 27/57 (47%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198
           GP   +GPPG    P   R   G    P A  FPG AGR     T P  P+G++G P
Sbjct: 763 GPSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGITGPP 807



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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 25/59 (42%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG----R*AKKITLPEAPAGVSG 192
           GPP   GP GA R P   R   G   L  A+  PG AG    R A   T P  PAG  G
Sbjct: 451 GPPGAAGPTGA-RGPPGPRGQQGFQGLAGAQGTPGEAGKTGERGAVGATGPSGPAGPGG 508



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>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 28/75 (37%), Positives = 30/75 (40%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           GPP  +GPPG                L PA P PG AG   K +  P  P G SGLP   
Sbjct: 88  GPPGPNGPPG------------DRGALGPAGP-PGPAG---KGLPGPPGPPGPSGLPGGN 131

Query: 208 VNRHIPAREILTRFP 252
             R  P    L  FP
Sbjct: 132 GFRGPPGPSGLPGFP 146



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>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 21/57 (36%), Positives = 22/57 (38%)
 Frame = +1

Query: 28   GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198
            G P FHG PG    P            PP  P P L G   K    P+ P G  GLP
Sbjct: 1223 GEPGFHGFPGVQGPPG-----------PPGSPGPALEG--PKGNPGPQGPPGRPGLP 1266



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>US10_EHV4 (P18349) 28 kDa protein (ORF3)|
          Length = 259

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 219 VAVDGDVRKSGDAGGGLG 166
           +AVDGDVR  GD GGG G
Sbjct: 40  MAVDGDVRTGGDCGGGEG 57



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>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV)]
          Length = 1367

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 109  PPAEP-FPGLAGR*AKKITLPEAPAGVSGLP 198
            PP  P +PGL G+  + +  P+ P G+ GLP
Sbjct: 1033 PPGLPGYPGLVGQKGEAVVGPQGPPGIPGLP 1063



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>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = +1

Query: 25  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNV 204
           +GPP   GPPG    P     SSG   +   + FPG  G     +  P+   G  GLP +
Sbjct: 801 IGPPGAMGPPGGEGPPG----SSGPPGIKGEKGFPGFPG---LDMPGPKGDKGSQGLPGL 853

Query: 205 AVNRHIP 225
                +P
Sbjct: 854 TGQSGLP 860



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>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +1

Query: 25  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNV 204
           +GPP   GPPG    P      SG   +   + FPG  G     +  P+   G  GLP +
Sbjct: 801 IGPPGARGPPGGQGPPG----LSGPPGIKGEKGFPGFPG---LDMPGPKGDKGAQGLPGI 853

Query: 205 AVNRHIP 225
                +P
Sbjct: 854 TGQSGLP 860



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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 28  GPPDFHGP---PGAHRTPRDVRCS--SGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSG 192
           GP   HG    PGA   PR       SG   LP    +PG+ G   + +   E PAG+ G
Sbjct: 564 GPNGDHGDCGMPGAPGKPRSAGSDGLSGSPGLPGIPGYPGMKGEAGEIVGPMENPAGIPG 623

Query: 193 L 195
           L
Sbjct: 624 L 624



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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
 Frame = +1

Query: 28   GPPDFHGPPGAHRTPRDVRCSSGHWTLP-----PAEP-------FPGLAGR*AKKITLPE 171
            G P   G PG    PR ++  +G    P     P  P        PGL G+  K IT P+
Sbjct: 1220 GLPGLEGQPG----PRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPK 1275

Query: 172  APAGVSGLP 198
              AG+ GLP
Sbjct: 1276 GNAGLPGLP 1284



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
 Frame = +1

Query: 4    YNRA*TVLGPPDFHGPPGAHRTPR-----DVRCSSGHWTLPPAEPFPGLAGR*AKK-ITL 165
            Y  A  + G P   G PGA   P        R + G    P     PGL G   +  +  
Sbjct: 1304 YAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPG 1363

Query: 166  PEAPAGVSGLPNVAVNRHIP 225
            P+ PAG+ GLP +     +P
Sbjct: 1364 PQGPAGLPGLPGLKGEPGLP 1383



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +1

Query: 22  VLGPPDFHGPPGAHRTPR----DVRCSSGHWTLPPAEPFPGLAGR*AKK--ITLPEAPAG 183
           V GPP   GPPGA   P     D +   G   LP  +  PGL G   +K  + LP    G
Sbjct: 434 VQGPPGLAGPPGAKGEPGPRGVDGQSIPG---LPGKDGRPGLDGLPGRKGEMGLP----G 486

Query: 184 VSGLPNVAVN 213
           V G P  ++N
Sbjct: 487 VRGPPGDSLN 496



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>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPF-PGLAGR*AKKITLPEAPAGVSGLP 198
           GPP   G PGA  TP +    +    L P EP  PG AG        P+ P G  G P
Sbjct: 187 GPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAG--------PQGPPGSPGQP 236



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>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEP 123
           GPP   GPPG H +P D  C +G    PP  P
Sbjct: 435 GPP---GPPGPHISPSDEICETG----PPGPP 459



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AKKITLPEAPAGVSG 192
           G P   GPPGA  TP  +         P   P FPG  G     +  P  P G+ G
Sbjct: 716 GFPGIQGPPGAPGTPGRIGLEG-----PSGPPGFPGPKGEPGLGLPGPPGPPGLPG 766



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>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor|
          Length = 1707

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSG 96
           GPP F GPPG   TP    C +G
Sbjct: 637 GPPGFPGPPGPPGTPGQRDCDTG 659



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>GUNB_FUSOX (P46236) Putative endoglucanase type B precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 462

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 136 PTLETVQPEVGSSGRKSTARRAVSGAPPAAHENP 35
           P+  T      + G  +TA  +V+ APPAA +NP
Sbjct: 74  PSSTTATKTTATGGSSTTAGGSVTSAPPAASDNP 107



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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/76 (30%), Positives = 28/76 (36%)
 Frame = +1

Query: 31  PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210
           PP     PG+   P       G    PP  PFPG  G       +P  P G+   P    
Sbjct: 684 PPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG-------IPPPPPGMGVPPPPPF 736

Query: 211 NRHIPAREILTRFPFG 258
              +PA  +L   PFG
Sbjct: 737 GFGVPAAPVL---PFG 749



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>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 23/67 (34%), Positives = 27/67 (40%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           GPP   GPPGA   P +    +G    P  +  PG  G        P  PAG +G P  A
Sbjct: 148 GPPGPPGPPGAPGDPGE----AGTPGRPGTDAAPGSPGPRG-----PPGPAGEAGAPGPA 198

Query: 208 VNRHIPA 228
                PA
Sbjct: 199 GEPGTPA 205



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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = +1

Query: 25   LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 1000 MGPPGLAGPPG----------ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049

Query: 193  LP 198
             P
Sbjct: 1050 AP 1051



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 24/66 (36%), Positives = 26/66 (39%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           GP  F GPPGA                P A+  PG AG  AK    P  PAG +G P   
Sbjct: 809 GPAGFAGPPGADGQ-------------PGAKGEPGDAG--AKGDAGPPGPAGPAGPPGPI 853

Query: 208 VNRHIP 225
            N   P
Sbjct: 854 GNVGAP 859



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>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSS 93
           GPP F GPPG   TP  + C +
Sbjct: 642 GPPGFLGPPGPAGTPGQIDCDT 663



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           G P   GP G      + RC+ G   +   +  PGL G        P+  AG++G P   
Sbjct: 466 GSPGARGPKGWKGDAGECRCTEGDEAI---KGLPGLPG--------PKGFAGINGEPGRK 514

Query: 208 VNRHIPAREILTRFP 252
            ++  P +  L  FP
Sbjct: 515 GDKGDPGQHGLPGFP 529



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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +1

Query: 43   HGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAVNRHI 222
            H PPG  R P  V    G           G AG       LPE PAG   L  +     +
Sbjct: 1856 HAPPGT-RKPHTVVVQMGE----------GTAG--TVTTLLPEEPAGALDLTGMRPESQL 1902

Query: 223  PAREILTRFPFG 258
               +++ +FPFG
Sbjct: 1903 ACCDMVYKFPFG 1914



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>SFTPA_MACMU (Q9TUC5) Pulmonary surfactant-associated protein A (SP-A) (PSP-A)|
           (PSAP) (Fragment)
          Length = 165

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 46  GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141
           GPPG    P D+ C  G+  LP A   PG  G
Sbjct: 7   GPPGPMGPPGDMPCFPGNDGLPGAPGIPGECG 38



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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 22  VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141
           ++GPP   GP G    P D R   G   LP A+  PG  G
Sbjct: 452 IMGPPGLQGPTGPPGDPGD-RGPPGRPGLPGADGLPGPPG 490



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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = +1

Query: 25   LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 996  MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPG 1045

Query: 193  LP 198
             P
Sbjct: 1046 AP 1047



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 24/66 (36%), Positives = 26/66 (39%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           GP  F GPPGA                P A+  PG AG  AK    P  PAG +G P   
Sbjct: 805 GPAGFAGPPGADGQ-------------PGAKGEPGDAG--AKGDAGPPGPAGPTGPPGPI 849

Query: 208 VNRHIP 225
            N   P
Sbjct: 850 GNVGAP 855



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>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase|
           domain 11) (Metalloproteinase-like, disintegrin-like,
           and cysteine-rich protein) (MDC)
          Length = 773

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 260 PPKGNRVKISRAGM-WRLTATLGSPETPAGASGRVIFFA*RPANPGNGSAGGRVQWPE 90
           PP G      R  + WR +A +GSPE+P G+          P+     S+GG V+ P+
Sbjct: 19  PPPGLGALGPRGALHWRSSAHVGSPESPEGSE------VTEPSRLVRQSSGGEVRKPQ 70



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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = +1

Query: 31  PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210
           PP   G  G    P  +    G   +PP  PFPG  G       +P  P G+   P    
Sbjct: 683 PPPLPGEAGMPPPPPPLPGGPG---IPPPPPFPGGPG-------IPPPPPGMGMPPPPPF 732

Query: 211 NRHIPAREILTRFPFG 258
              +PA  +L   PFG
Sbjct: 733 GFGVPAAPVL---PFG 745



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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = +1

Query: 25   LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 989  MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPG 1038

Query: 193  LP 198
             P
Sbjct: 1039 AP 1040



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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = +1

Query: 25   LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192
            +GPP   GPPG           SG    P AE  PG  G    K     T P  P G  G
Sbjct: 989  MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPG 1038

Query: 193  LP 198
             P
Sbjct: 1039 AP 1040



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>AP2_ARATH (P47927) Floral homeotic protein APETALA2|
          Length = 432

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 189 GDAGGGLGKSYLFCLTACQPWKRFSRR*GPVAGRAPHVARCPVRPRRPMKIRRTEYRSR 13
           G    G  +++ F +  CQ         G  AG+A +VA   V P +P+K  R   RSR
Sbjct: 74  GGVASGFPRAHWFGVKFCQS----DLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSR 128



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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 150 CLTACQPWKRFSRR*GPVAGRAPHVARCPVRPR 52
           CL  CQ  +  S R GP   R P   R P  PR
Sbjct: 18  CLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPR 50



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>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = +1

Query: 22  VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPE-APAGVSGLP 198
           V GPP  HGPPG    P   +        P    FPG  G   K     E  P G  G+P
Sbjct: 253 VKGPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGAPGEPGPQGPIGVP 304

Query: 199 NVAVNRHIP 225
            V     IP
Sbjct: 305 GVQGPPGIP 313



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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +1

Query: 31   PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210
            PP    PP   R+P   R   G    PP+   PG+A R   +I  P++P G +   N+  
Sbjct: 1119 PPQRPPPPSGARSPAPARKEFGGVGAPPS---PGVARR---EIEAPKSP-GTARKDNIGR 1171

Query: 211  NRHIPAREILTRFPFG 258
            N+  P   +    P G
Sbjct: 1172 NQPSPQAGLAGPGPAG 1187



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>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 104  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 220
            P  R +R Q W AV+    L   P PASP  L  P+ A+
Sbjct: 1832 PKSRPSRNQRWGAVRADESLTAIPEPASPQLLDIPTHAS 1870



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>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +1

Query: 25  LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPE-APAGVSGLP 198
           +GPP   GPPG           SG    P AE  PG  G    K    E  PAG  G P
Sbjct: 562 MGPPGLAGPPG----------ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGAPGPP 610



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 24/66 (36%), Positives = 26/66 (39%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           GP  F GPPGA                P A+  PG AG  AK    P  PAG +G P   
Sbjct: 371 GPAGFAGPPGADGQ-------------PGAKGEPGDAG--AKGDAGPPGPAGPAGPPGPI 415

Query: 208 VNRHIP 225
            N   P
Sbjct: 416 GNVGAP 421



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>MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 antigen)|
           (Neurotrophin receptor-interacting MAGE homolog) (MAGE
           tumor antigen CCF)
          Length = 778

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP 129
           GPPD+ GPP     P         W LPP  P P
Sbjct: 394 GPPDWQGPPDWPLPP--------DWPLPPDWPLP 419



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>MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)|
          Length = 784

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP 129
           GPPD+ GPP     P         W LPP  P P
Sbjct: 400 GPPDWQGPPDWPLPP--------DWPLPPDWPLP 425



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>ZN694_HUMAN (Q63HK3) Zinc finger protein 694|
          Length = 967

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 22  VLGPPDFHGPPGAHRTPRDVRCSSG 96
           ++  P+F GPPG  ++P D    SG
Sbjct: 643 IVQEPEFQGPPGLLQSPNDFEIGSG 667



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>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor|
          Length = 743

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPE-APAGVSGLPNV 204
           GPP  HGPPG    P   +        P    FPG  G   K     E  P G+ G+P V
Sbjct: 255 GPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGPPGEPGPQGLIGVPGV 306



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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 31  PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGL 135
           PP  HGPP     P       G W  PP    P L
Sbjct: 260 PPPGHGPPPPQHQPSPYGGQQGGWAPPPRPYSPQL 294



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>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 22  VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141
           ++GPP   GP G    P D R   G   LP A+  PG  G
Sbjct: 450 LMGPPGLQGPSGLPGDPGD-RGPPGRPGLPGADGLPGPPG 488



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>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 257 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFFA*RPANPGNGSAGGRVQWPEEHR 81
           P   R   +R G+ R  A+ GS P  P GA G       RP  PG    GGR   P   R
Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224

Query: 80  TSRG 69
           +  G
Sbjct: 225 SDAG 228



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>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 257 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFFA*RPANPGNGSAGGRVQWPEEHR 81
           P   R   +R G+ R  A+ GS P  P GA G       RP  PG    GGR   P   R
Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224

Query: 80  TSRG 69
           +  G
Sbjct: 225 SDAG 228



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>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +1

Query: 19  TVLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198
           T+ GPP   GPPG            G   +P A   PG +   +++I  P  P G  G P
Sbjct: 559 TMQGPPGPPGPPG----------PKGDAGVPGAPGIPGTSRGGSRQIQGPPGPPGPPGPP 608



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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 20/86 (23%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTP-----RDVRCSSGHWTLP--------PAEP-------FPGLAGR* 147
           GPP F GPPG    P       +  S GH   P        P  P        PG  G  
Sbjct: 677 GPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGG-- 734

Query: 148 AKKITLPEAPAGVSGLPNVAVNRHIP 225
            +K + P  P G  G P V   + IP
Sbjct: 735 -EKGSSPVGPPGPPGSPGVNGQKGIP 759



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK---ITLPEAPAGVSGLP 198
           GPP   G PG +    DV         PP  P  GL GR  +    +  P  P G  GLP
Sbjct: 367 GPPGDPGFPGRYGETGDVG--------PPGPP--GLLGRPGEACAGMIGPPGPQGFPGLP 416

Query: 199 NVAVNRHIPAR 231
            +     IP R
Sbjct: 417 GLPGEAGIPGR 427



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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
 Frame = +1

Query: 25   LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192
            +GPP   GPPG           +G    P AE  PG  G    K     T P  P G  G
Sbjct: 989  MGPPGLAGPPG----------EAGREGAPGAEGAPGRDGAAGPKGDRGETGPAGPPGAPG 1038

Query: 193  LP 198
             P
Sbjct: 1039 AP 1040



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>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I|
          Length = 602

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 115 AEPFPGLAGR*AKKITLPEAPAGVSGLPNVAVNRHIPAREILTRF 249
           A P PG   R A  + +P AP G + +   +V+  + AR  + R+
Sbjct: 173 ALPMPGAPERPAVALPMPGAPEGPAAIQQPSVDVKLTARRTIIRY 217



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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 150 CLTACQPWKRFSRR*GPVAGRAPHVARCPVRPR 52
           CL  CQ  +  S R GP   R P   R P  PR
Sbjct: 18  CLATCQYLQSGSVRKGPTGDRGPRGQRGPAGPR 50



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>OTO1_ONCKE (P83371) Otolin-1 precursor|
          Length = 508

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 22  VLGPPDFHGPPGAHRTPRDV--RCSSGHWTLPPAEPFPGLAGR*AKKITL-PEAPAGVSG 192
           ++GPP   G PGA     D   +   G   +P A   PG+ G+   K  L P+   G +G
Sbjct: 172 LMGPPGLDGMPGATGLEGDKGDKGDQGDTGMPGA---PGILGKEGPKGDLGPKGEKGETG 228

Query: 193 LPNV 204
           LP +
Sbjct: 229 LPGL 232



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>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 104  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 220
            P  + +R Q W AV+    L   P PASP  L +P  A+
Sbjct: 1748 PKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHAS 1786



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>SFTA1_HUMAN (Q8IWL2) Pulmonary surfactant-associated protein A1 precursor|
           (SP-A1) (SP-A) (PSP-A) (PSPA) (Alveolar proteinosis
           protein) (35 kDa pulmonary surfactant-associated
           protein)
          Length = 248

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 46  GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141
           GPPG    P ++ C  G+  LP A   PG  G
Sbjct: 55  GPPGPMGPPGEMPCPPGNDGLPGAPGIPGECG 86



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>STF1_HORSE (Q9GKL2) Steroidogenic factor 1 (STF-1) (SF-1)|
          Length = 461

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = +1

Query: 31  PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210
           PPD+  PPG H  P     +SG    PPA P  G  G  A  + +P     ++G    A 
Sbjct: 135 PPDYMLPPGLH-VPEPKGLASG----PPAGPL-GDFGAPALPMAVPSTNGPLAGYLYPA- 187

Query: 211 NRHIPAREILTRFP 252
               P R I + +P
Sbjct: 188 ---FPGRAIKSEYP 198



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>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor|
          Length = 684

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 47  GRRGRTGHRATCGALPATGP 106
           G RG  GHR + GAL   GP
Sbjct: 376 GERGEAGHRGSAGALGPQGP 395



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>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5|
          Length = 317

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 24/64 (37%), Positives = 25/64 (39%)
 Frame = +1

Query: 28  GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207
           GPP   GPPG +  P       G    P A    G  G  A     P   A V    NVA
Sbjct: 232 GPP---GPPGPNGQPGH----PGQDGQPGAPGNDGAPGSDAAYCPCPARSAAVFRHRNVA 284

Query: 208 VNRH 219
           VNRH
Sbjct: 285 VNRH 288



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>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 104  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 220
            P  + +R Q W AV+    L   P PASP  L +P  A+
Sbjct: 1830 PKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHAS 1868



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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
 Frame = +1

Query: 22   VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPA--EPFPGLAGR*AKKITLPEAPAGVSGL 195
            + GP    GP G H  P     + GH  + P      PG  G        P  P G  GL
Sbjct: 1040 ITGPAGPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLG--------PAGPPGSPGL 1091

Query: 196  PNVA 207
            P  A
Sbjct: 1092 PGPA 1095


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,692,992
Number of Sequences: 219361
Number of extensions: 1038571
Number of successful extensions: 4098
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 3454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4058
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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