| Clone Name | rbast01h09 |
|---|---|
| Clone Library Name | barley_pub |
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 37.4 bits (85), Expect = 0.010 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = +1 Query: 40 FHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AKKITLPEAPAGVSGLPNVAVNR 216 F GPPGA P+ V SG PP P FPG G P PAG+ G+P + R Sbjct: 390 FEGPPGAPG-PQGVVGPSG----PPGPPGFPGDPG--------PPGPAGLPGIPGIDGIR 436 Query: 217 HIPAREILTRFPFGG 261 P I+ F F G Sbjct: 437 GPPGTVIMMPFQFAG 451
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 33.5 bits (75), Expect = 0.15 Identities = 24/57 (42%), Positives = 27/57 (47%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198 GP +GPPG P R G P A FPG AGR T P P+G+SG P Sbjct: 761 GPSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGISGPP 805
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 32.3 bits (72), Expect = 0.32 Identities = 23/57 (40%), Positives = 27/57 (47%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198 GP +GPPG P R G P A FPG AGR T P P+G++G P Sbjct: 763 GPSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGITGPP 807
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 31.6 bits (70), Expect = 0.55 Identities = 25/59 (42%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG----R*AKKITLPEAPAGVSG 192 GPP GP GA R P R G L A+ PG AG R A T P PAG G Sbjct: 451 GPPGAAGPTGA-RGPPGPRGQQGFQGLAGAQGTPGEAGKTGERGAVGATGPSGPAGPGG 508
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 31.2 bits (69), Expect = 0.72 Identities = 28/75 (37%), Positives = 30/75 (40%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 GPP +GPPG L PA P PG AG K + P P G SGLP Sbjct: 88 GPPGPNGPPG------------DRGALGPAGP-PGPAG---KGLPGPPGPPGPSGLPGGN 131 Query: 208 VNRHIPAREILTRFP 252 R P L FP Sbjct: 132 GFRGPPGPSGLPGFP 146
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 31.2 bits (69), Expect = 0.72 Identities = 21/57 (36%), Positives = 22/57 (38%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198 G P FHG PG P PP P P L G K P+ P G GLP Sbjct: 1223 GEPGFHGFPGVQGPPG-----------PPGSPGPALEG--PKGNPGPQGPPGRPGLP 1266
>US10_EHV4 (P18349) 28 kDa protein (ORF3)| Length = 259 Score = 30.8 bits (68), Expect = 0.94 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -1 Query: 219 VAVDGDVRKSGDAGGGLG 166 +AVDGDVR GD GGG G Sbjct: 40 MAVDGDVRTGGDCGGGEG 57
>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV)] Length = 1367 Score = 30.8 bits (68), Expect = 0.94 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 109 PPAEP-FPGLAGR*AKKITLPEAPAGVSGLP 198 PP P +PGL G+ + + P+ P G+ GLP Sbjct: 1033 PPGLPGYPGLVGQKGEAVVGPQGPPGIPGLP 1063
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 30.4 bits (67), Expect = 1.2 Identities = 21/67 (31%), Positives = 28/67 (41%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNV 204 +GPP GPPG P SSG + + FPG G + P+ G GLP + Sbjct: 801 IGPPGAMGPPGGEGPPG----SSGPPGIKGEKGFPGFPG---LDMPGPKGDKGSQGLPGL 853 Query: 205 AVNRHIP 225 +P Sbjct: 854 TGQSGLP 860
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/67 (29%), Positives = 27/67 (40%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNV 204 +GPP GPPG P SG + + FPG G + P+ G GLP + Sbjct: 801 IGPPGARGPPGGQGPPG----LSGPPGIKGEKGFPGFPG---LDMPGPKGDKGAQGLPGI 853 Query: 205 AVNRHIP 225 +P Sbjct: 854 TGQSGLP 860
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Frame = +1 Query: 28 GPPDFHGP---PGAHRTPRDVRCS--SGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSG 192 GP HG PGA PR SG LP +PG+ G + + E PAG+ G Sbjct: 564 GPNGDHGDCGMPGAPGKPRSAGSDGLSGSPGLPGIPGYPGMKGEAGEIVGPMENPAGIPG 623 Query: 193 L 195 L Sbjct: 624 L 624
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 30.0 bits (66), Expect = 1.6 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLP-----PAEP-------FPGLAGR*AKKITLPE 171 G P G PG PR ++ +G P P P PGL G+ K IT P+ Sbjct: 1220 GLPGLEGQPG----PRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPK 1275 Query: 172 APAGVSGLP 198 AG+ GLP Sbjct: 1276 GNAGLPGLP 1284 Score = 27.7 bits (60), Expect = 8.0 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Frame = +1 Query: 4 YNRA*TVLGPPDFHGPPGAHRTPR-----DVRCSSGHWTLPPAEPFPGLAGR*AKK-ITL 165 Y A + G P G PGA P R + G P PGL G + + Sbjct: 1304 YAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPG 1363 Query: 166 PEAPAGVSGLPNVAVNRHIP 225 P+ PAG+ GLP + +P Sbjct: 1364 PQGPAGLPGLPGLKGEPGLP 1383 Score = 27.7 bits (60), Expect = 8.0 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPR----DVRCSSGHWTLPPAEPFPGLAGR*AKK--ITLPEAPAG 183 V GPP GPPGA P D + G LP + PGL G +K + LP G Sbjct: 434 VQGPPGLAGPPGAKGEPGPRGVDGQSIPG---LPGKDGRPGLDGLPGRKGEMGLP----G 486 Query: 184 VSGLPNVAVN 213 V G P ++N Sbjct: 487 VRGPPGDSLN 496
>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)| Length = 299 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPF-PGLAGR*AKKITLPEAPAGVSGLP 198 GPP G PGA TP + + L P EP PG AG P+ P G G P Sbjct: 187 GPPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAG--------PQGPPGSPGQP 236
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEP 123 GPP GPPG H +P D C +G PP P Sbjct: 435 GPP---GPPGPHISPSDEICETG----PPGPP 459 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AKKITLPEAPAGVSG 192 G P GPPGA TP + P P FPG G + P P G+ G Sbjct: 716 GFPGIQGPPGAPGTPGRIGLEG-----PSGPPGFPGPKGEPGLGLPGPPGPPGLPG 766
>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor| Length = 1707 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSG 96 GPP F GPPG TP C +G Sbjct: 637 GPPGFPGPPGPPGTPGQRDCDTG 659
>GUNB_FUSOX (P46236) Putative endoglucanase type B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 462 Score = 29.6 bits (65), Expect = 2.1 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 136 PTLETVQPEVGSSGRKSTARRAVSGAPPAAHENP 35 P+ T + G +TA +V+ APPAA +NP Sbjct: 74 PSSTTATKTTATGGSSTTAGGSVTSAPPAASDNP 107
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 29.6 bits (65), Expect = 2.1 Identities = 23/76 (30%), Positives = 28/76 (36%) Frame = +1 Query: 31 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210 PP PG+ P G PP PFPG G +P P G+ P Sbjct: 684 PPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG-------IPPPPPGMGVPPPPPF 736 Query: 211 NRHIPAREILTRFPFG 258 +PA +L PFG Sbjct: 737 GFGVPAAPVL---PFG 749
>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein| dumpy-15) Length = 296 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/67 (34%), Positives = 27/67 (40%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 GPP GPPGA P + +G P + PG G P PAG +G P A Sbjct: 148 GPPGPPGPPGAPGDPGE----AGTPGRPGTDAAPGSPGPRG-----PPGPAGEAGAPGPA 198 Query: 208 VNRHIPA 228 PA Sbjct: 199 GEPGTPA 205
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192 +GPP GPPG SG P AE PG G K T P P G G Sbjct: 1000 MGPPGLAGPPG----------ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049 Query: 193 LP 198 P Sbjct: 1050 AP 1051 Score = 28.1 bits (61), Expect = 6.1 Identities = 24/66 (36%), Positives = 26/66 (39%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 GP F GPPGA P A+ PG AG AK P PAG +G P Sbjct: 809 GPAGFAGPPGADGQ-------------PGAKGEPGDAG--AKGDAGPPGPAGPAGPPGPI 853 Query: 208 VNRHIP 225 N P Sbjct: 854 GNVGAP 859
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSS 93 GPP F GPPG TP + C + Sbjct: 642 GPPGFLGPPGPAGTPGQIDCDT 663 Score = 28.5 bits (62), Expect = 4.7 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 G P GP G + RC+ G + + PGL G P+ AG++G P Sbjct: 466 GSPGARGPKGWKGDAGECRCTEGDEAI---KGLPGLPG--------PKGFAGINGEPGRK 514 Query: 208 VNRHIPAREILTRFP 252 ++ P + L FP Sbjct: 515 GDKGDPGQHGLPGFP 529
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/72 (30%), Positives = 28/72 (38%) Frame = +1 Query: 43 HGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAVNRHI 222 H PPG R P V G G AG LPE PAG L + + Sbjct: 1856 HAPPGT-RKPHTVVVQMGE----------GTAG--TVTTLLPEEPAGALDLTGMRPESQL 1902 Query: 223 PAREILTRFPFG 258 +++ +FPFG Sbjct: 1903 ACCDMVYKFPFG 1914
>SFTPA_MACMU (Q9TUC5) Pulmonary surfactant-associated protein A (SP-A) (PSP-A)| (PSAP) (Fragment) Length = 165 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +1 Query: 46 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141 GPPG P D+ C G+ LP A PG G Sbjct: 7 GPPGPMGPPGDMPCFPGNDGLPGAPGIPGECG 38
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141 ++GPP GP G P D R G LP A+ PG G Sbjct: 452 IMGPPGLQGPTGPPGDPGD-RGPPGRPGLPGADGLPGPPG 490
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192 +GPP GPPG SG P AE PG G K T P P G G Sbjct: 996 MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPG 1045 Query: 193 LP 198 P Sbjct: 1046 AP 1047 Score = 28.1 bits (61), Expect = 6.1 Identities = 24/66 (36%), Positives = 26/66 (39%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 GP F GPPGA P A+ PG AG AK P PAG +G P Sbjct: 805 GPAGFAGPPGADGQ-------------PGAKGEPGDAG--AKGDAGPPGPAGPTGPPGPI 849 Query: 208 VNRHIP 225 N P Sbjct: 850 GNVGAP 855
>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase| domain 11) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein) (MDC) Length = 773 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = -2 Query: 260 PPKGNRVKISRAGM-WRLTATLGSPETPAGASGRVIFFA*RPANPGNGSAGGRVQWPE 90 PP G R + WR +A +GSPE+P G+ P+ S+GG V+ P+ Sbjct: 19 PPPGLGALGPRGALHWRSSAHVGSPESPEGSE------VTEPSRLVRQSSGGEVRKPQ 70
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 28.9 bits (63), Expect = 3.6 Identities = 23/76 (30%), Positives = 29/76 (38%) Frame = +1 Query: 31 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210 PP G G P + G +PP PFPG G +P P G+ P Sbjct: 683 PPPLPGEAGMPPPPPPLPGGPG---IPPPPPFPGGPG-------IPPPPPGMGMPPPPPF 732 Query: 211 NRHIPAREILTRFPFG 258 +PA +L PFG Sbjct: 733 GFGVPAAPVL---PFG 745
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192 +GPP GPPG SG P AE PG G K T P P G G Sbjct: 989 MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPG 1038 Query: 193 LP 198 P Sbjct: 1039 AP 1040
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192 +GPP GPPG SG P AE PG G K T P P G G Sbjct: 989 MGPPGLAGPPG----------ESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPG 1038 Query: 193 LP 198 P Sbjct: 1039 AP 1040
>AP2_ARATH (P47927) Floral homeotic protein APETALA2| Length = 432 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = -1 Query: 189 GDAGGGLGKSYLFCLTACQPWKRFSRR*GPVAGRAPHVARCPVRPRRPMKIRRTEYRSR 13 G G +++ F + CQ G AG+A +VA V P +P+K R RSR Sbjct: 74 GGVASGFPRAHWFGVKFCQS----DLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSR 128
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -1 Query: 150 CLTACQPWKRFSRR*GPVAGRAPHVARCPVRPR 52 CL CQ + S R GP R P R P PR Sbjct: 18 CLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPR 50
>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 28.5 bits (62), Expect = 4.7 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPE-APAGVSGLP 198 V GPP HGPPG P + P FPG G K E P G G+P Sbjct: 253 VKGPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGAPGEPGPQGPIGVP 304 Query: 199 NVAVNRHIP 225 V IP Sbjct: 305 GVQGPPGIP 313
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.5 bits (62), Expect = 4.7 Identities = 23/76 (30%), Positives = 33/76 (43%) Frame = +1 Query: 31 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210 PP PP R+P R G PP+ PG+A R +I P++P G + N+ Sbjct: 1119 PPQRPPPPSGARSPAPARKEFGGVGAPPS---PGVARR---EIEAPKSP-GTARKDNIGR 1171 Query: 211 NRHIPAREILTRFPFG 258 N+ P + P G Sbjct: 1172 NQPSPQAGLAGPGPAG 1187
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 104 PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 220 P R +R Q W AV+ L P PASP L P+ A+ Sbjct: 1832 PKSRPSRNQRWGAVRADESLTAIPEPASPQLLDIPTHAS 1870
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 28.5 bits (62), Expect = 4.7 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPE-APAGVSGLP 198 +GPP GPPG SG P AE PG G K E PAG G P Sbjct: 562 MGPPGLAGPPG----------ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGAPGPP 610 Score = 28.1 bits (61), Expect = 6.1 Identities = 24/66 (36%), Positives = 26/66 (39%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 GP F GPPGA P A+ PG AG AK P PAG +G P Sbjct: 371 GPAGFAGPPGADGQ-------------PGAKGEPGDAG--AKGDAGPPGPAGPAGPPGPI 415 Query: 208 VNRHIP 225 N P Sbjct: 416 GNVGAP 421
>MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (MAGE tumor antigen CCF) Length = 778 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP 129 GPPD+ GPP P W LPP P P Sbjct: 394 GPPDWQGPPDWPLPP--------DWPLPPDWPLP 419
>MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)| Length = 784 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFP 129 GPPD+ GPP P W LPP P P Sbjct: 400 GPPDWQGPPDWPLPP--------DWPLPPDWPLP 425
>ZN694_HUMAN (Q63HK3) Zinc finger protein 694| Length = 967 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPRDVRCSSG 96 ++ P+F GPPG ++P D SG Sbjct: 643 IVQEPEFQGPPGLLQSPNDFEIGSG 667
>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor| Length = 743 Score = 28.1 bits (61), Expect = 6.1 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPE-APAGVSGLPNV 204 GPP HGPPG P + P FPG G K E P G+ G+P V Sbjct: 255 GPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGPPGEPGPQGLIGVPGV 306
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/35 (37%), Positives = 13/35 (37%) Frame = +1 Query: 31 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGL 135 PP HGPP P G W PP P L Sbjct: 260 PPPGHGPPPPQHQPSPYGGQQGGWAPPPRPYSPQL 294
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141 ++GPP GP G P D R G LP A+ PG G Sbjct: 450 LMGPPGLQGPSGLPGDPGD-RGPPGRPGLPGADGLPGPPG 488
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 28.1 bits (61), Expect = 6.1 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = -2 Query: 257 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFFA*RPANPGNGSAGGRVQWPEEHR 81 P R +R G+ R A+ GS P P GA G RP PG GGR P R Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224 Query: 80 TSRG 69 + G Sbjct: 225 SDAG 228
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 28.1 bits (61), Expect = 6.1 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = -2 Query: 257 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFFA*RPANPGNGSAGGRVQWPEEHR 81 P R +R G+ R A+ GS P P GA G RP PG GGR P R Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224 Query: 80 TSRG 69 + G Sbjct: 225 SDAG 228
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = +1 Query: 19 TVLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLP 198 T+ GPP GPPG G +P A PG + +++I P P G G P Sbjct: 559 TMQGPPGPPGPPG----------PKGDAGVPGAPGIPGTSRGGSRQIQGPPGPPGPPGPP 608
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 28.1 bits (61), Expect = 6.1 Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 20/86 (23%) Frame = +1 Query: 28 GPPDFHGPPGAHRTP-----RDVRCSSGHWTLP--------PAEP-------FPGLAGR* 147 GPP F GPPG P + S GH P P P PG G Sbjct: 677 GPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGG-- 734 Query: 148 AKKITLPEAPAGVSGLPNVAVNRHIP 225 +K + P P G G P V + IP Sbjct: 735 -EKGSSPVGPPGPPGSPGVNGQKGIP 759 Score = 28.1 bits (61), Expect = 6.1 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK---ITLPEAPAGVSGLP 198 GPP G PG + DV PP P GL GR + + P P G GLP Sbjct: 367 GPPGDPGFPGRYGETGDVG--------PPGPP--GLLGRPGEACAGMIGPPGPQGFPGLP 416 Query: 199 NVAVNRHIPAR 231 + IP R Sbjct: 417 GLPGEAGIPGR 427
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.1 bits (61), Expect = 6.1 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 4/62 (6%) Frame = +1 Query: 25 LGPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKK----ITLPEAPAGVSG 192 +GPP GPPG +G P AE PG G K T P P G G Sbjct: 989 MGPPGLAGPPG----------EAGREGAPGAEGAPGRDGAAGPKGDRGETGPAGPPGAPG 1038 Query: 193 LP 198 P Sbjct: 1039 AP 1040
>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I| Length = 602 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 115 AEPFPGLAGR*AKKITLPEAPAGVSGLPNVAVNRHIPAREILTRF 249 A P PG R A + +P AP G + + +V+ + AR + R+ Sbjct: 173 ALPMPGAPERPAVALPMPGAPEGPAAIQQPSVDVKLTARRTIIRY 217
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 27.7 bits (60), Expect = 8.0 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -1 Query: 150 CLTACQPWKRFSRR*GPVAGRAPHVARCPVRPR 52 CL CQ + S R GP R P R P PR Sbjct: 18 CLATCQYLQSGSVRKGPTGDRGPRGQRGPAGPR 50
>OTO1_ONCKE (P83371) Otolin-1 precursor| Length = 508 Score = 27.7 bits (60), Expect = 8.0 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPRDV--RCSSGHWTLPPAEPFPGLAGR*AKKITL-PEAPAGVSG 192 ++GPP G PGA D + G +P A PG+ G+ K L P+ G +G Sbjct: 172 LMGPPGLDGMPGATGLEGDKGDKGDQGDTGMPGA---PGILGKEGPKGDLGPKGEKGETG 228 Query: 193 LPNV 204 LP + Sbjct: 229 LPGL 232
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 104 PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 220 P + +R Q W AV+ L P PASP L +P A+ Sbjct: 1748 PKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHAS 1786
>SFTA1_HUMAN (Q8IWL2) Pulmonary surfactant-associated protein A1 precursor| (SP-A1) (SP-A) (PSP-A) (PSPA) (Alveolar proteinosis protein) (35 kDa pulmonary surfactant-associated protein) Length = 248 Score = 27.7 bits (60), Expect = 8.0 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +1 Query: 46 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAG 141 GPPG P ++ C G+ LP A PG G Sbjct: 55 GPPGPMGPPGEMPCPPGNDGLPGAPGIPGECG 86
>STF1_HORSE (Q9GKL2) Steroidogenic factor 1 (STF-1) (SF-1)| Length = 461 Score = 27.7 bits (60), Expect = 8.0 Identities = 24/74 (32%), Positives = 32/74 (43%) Frame = +1 Query: 31 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVAV 210 PPD+ PPG H P +SG PPA P G G A + +P ++G A Sbjct: 135 PPDYMLPPGLH-VPEPKGLASG----PPAGPL-GDFGAPALPMAVPSTNGPLAGYLYPA- 187 Query: 211 NRHIPAREILTRFP 252 P R I + +P Sbjct: 188 ---FPGRAIKSEYP 198
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +2 Query: 47 GRRGRTGHRATCGALPATGP 106 G RG GHR + GAL GP Sbjct: 376 GERGEAGHRGSAGALGPQGP 395
>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5| Length = 317 Score = 27.7 bits (60), Expect = 8.0 Identities = 24/64 (37%), Positives = 25/64 (39%) Frame = +1 Query: 28 GPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AKKITLPEAPAGVSGLPNVA 207 GPP GPPG + P G P A G G A P A V NVA Sbjct: 232 GPP---GPPGPNGQPGH----PGQDGQPGAPGNDGAPGSDAAYCPCPARSAAVFRHRNVA 284 Query: 208 VNRH 219 VNRH Sbjct: 285 VNRH 288
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 104 PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 220 P + +R Q W AV+ L P PASP L +P A+ Sbjct: 1830 PKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHAS 1868
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 27.7 bits (60), Expect = 8.0 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Frame = +1 Query: 22 VLGPPDFHGPPGAHRTPRDVRCSSGHWTLPPA--EPFPGLAGR*AKKITLPEAPAGVSGL 195 + GP GP G H P + GH + P PG G P P G GL Sbjct: 1040 ITGPAGPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLG--------PAGPPGSPGL 1091 Query: 196 PNVA 207 P A Sbjct: 1092 PGPA 1095 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,692,992 Number of Sequences: 219361 Number of extensions: 1038571 Number of successful extensions: 4098 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 3454 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4058 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)